GgaINT0035772 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22608777-22609406:+
Coord C1 exon
chr8:22608777-22608904
Coord A exon
chr8:22608905-22609293
Coord C2 exon
chr8:22609294-22609406
Length
389 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CACGCTTTCTCCACCACTAGGAT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GCAAAGGGTTGCTGGTCTTGAGTGGAACCAAATGGTTTCAGCATCGGAAGTTGCTCACTCCAGCGTTTCACTATGATGTGCTGAAATCTTACGTGTCCCTGATGTCAGACTCAGTCAAAGTGATGTTG
Seq A exon
GTAAGAGGGGGGAAGAGGCTTAGATGGTTGCTAGAGCTCTGTCATCTGAGGGTGTGGGGGGGAATTATTTTCTTAAATTTGCTTTTCAGTTTTGTTTCTCTGAAATTTCTTCCTCTGGCTGTTGCACTTATTCTCTCTTCCACCTGCTTCCCAATGAAATCAGTCACAGCGAGAATATCTGTTCATAGCCCAGCAATGGTAAACACAGAAAAAGAAATGCAAAGAACGGTTTGATTACGTTCACAGGATATGCAGTGAACTAGGGCCTCTTTTTTGGAGACAATAACTAGCGGTGTGGATCAAGATAGGGGCAGGAACCATGACCTGATGGTACTGTGGCTGAGTCTGCTCTGGAAGTCTGTCTCTCCTCACGCTTTCTCCACCACTAG
Seq C2 exon
GATAAATGGGAGAAGAAGAAGTCAGTAGAGCTCTTCGAAGACGTCAGCCTGATGGCGCTGGACAGCATCATGAAATGCGCCTTCAGCTACAACGCCAACTGCCAGACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.3=100)
A:
NA
C2:
PF0006717=p450=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGTTGCTGGTCTTGAGTG
R:
CTCTGAGTCTGGCAGTTGGC
Band lengths:
238-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]