HsaINT0044545 @ hg19
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:20244]
Coordinates
chr1:47514237-47515176:+
Coord C1 exon
chr1:47514237-47514301
Coord A exon
chr1:47514302-47515093
Coord C2 exon
chr1:47515094-47515176
Length
792 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
GGGTTGTCCTCTCATTTCAGGTC
3' ss Score
10.66
Exon sequences
Seq C1 exon
GGATCACCGTGGTTCTTAGTATTTGGGGTCTTCACCACAACCCTGCTGTCTGGAAAAACCCAAAG
Seq A exon
GTATGATTCTCTCTTGTACATAAATACTTCCAAGAACTAATGCTGTGCAAGTCACTTTTTGGTAGCTAAGCACAGAAGTGGCTATATAATTAAGGGAAATGACACAAATTAAACAAAAATAAACATAAAAGCCAAAAGAAATGTAAAACTATTCTATGTTCTTGAAACACTCTTGACGTGTATCAGTGATTTCTTTCATGTAAGCCACTAAGGTTTAAGATCTATTACTTGTAACAGGAAGCTGGAGTATATGTCTCTGTAATAATTGGCCACATCATCATTTTGACTTGATTTCTAAGTGGATGCACATCCATTTCTAAGTGGATGTATCTCCATAGTGAAAATAATACCACTTGCCATAGTATTTTTGTTTGCCTGGGTATCAGACAAATCAGCTGTGAAGCTGCAAGGTCTGCAGGTCTGAAGGTACACTGCCCAGTGTAGTAGCCACGGGCCACATACGGCTACTGAGCACATGACATGTGGCCAGTTGGAATTGAGTTGTGCTGTAAGTTTAAAATACGTGCTGGATTTTGAAGACATAGTACCCTAAAAAAATGTGAAACATTTCCTTTTAGTAATTATTTATATTGATTACAGGTTGGAATGGTAATTTTTGGTTAAATAAACTCTATTAAGATTAACTTCACCTTTTAAAAATGTGACCACCAGAACATTTTAAATTACACATGTAGATCACATTATATTTCTATTGATCGGTGCTAGGTGGTAGGTGAAGAAATGTGTTCATGTTGTTTGGGGGATGGTGTTGGGGTTGTCCTCTCATTTCAG
Seq C2 exon
GTCTTTGACCCCTTGAGGTTCTCTCAGGAGAATTCTGATCAGAGACACCCCTATGCCTACTTACCATTCTCAGCTGGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-CYP4X1:NM_178033:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
NA
C2:
PF0006717=p450=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)