HsaINT0044648 @ hg38
Intron Retention
Gene
ENSG00000115165 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
Coordinates
chr2:157427351-157430652:-
Coord C1 exon
chr2:157430559-157430652
Coord A exon
chr2:157427421-157430558
Coord C2 exon
chr2:157427351-157427420
Length
3138 bp
Sequences
Splice sites
5' ss Seq
AACGTAACT
5' ss Score
6.72
3' ss Seq
TTTTTTTTTCCTTAAAACAGGAT
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTGATGTCCTTGCAAATATCAATGGTGTGAGCACAGAAGGTTTTACCTACAAACAAGTCGTTGACCTGATCAGATCGTCCGGAAACCTGCTAAC
Seq A exon
GTAACTATCTGTCTAGTTCCCGTGGGGCTTCAAAATGTTATGTTTTCTCATAAAGCCTGATGAGTGAATAAATAGGCCTTTTGTTCAGCATTACAAGACGGAGTGAGGCAGTGCACCGGAGCTTTAGAGTGGGGTACAAACATTATCAGTTCCTTTTGTTTCTCAAGATTCCTCACACTTGAACATACTGTCAACATCTGAAGTCAGAGGACATCAATAGCCCAAACGTCTGTGTGGGAAGGATGGCCTTTACAAATGTATTTTTTTAATGTCAAATTCAATTAAACTGGCACACATTCTCTTTAAACTGGGAAGAACTGATCCAATTTTCATGGTTGATATAATCCTGTAGCTAAAACAAATCAAAGGTCAGAAGGGCTGAGTTTTTCCTCTTATGTGACAAGCCACCTGTTTTTCTCTTCTAGTGTTCCATTTGGAAGGAAGAATAGTCTGTTCAACCCTCCCCACCCTGAAACACACATACTCACACCACATGTTCCAAATGTTCCAAACTTCTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCTGGATGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGCCCACCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCATCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCACCCGCCTCCGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCCCCTGGCCCCAAACTTCTTAATAGAACACTGGCTTTCCCAATTAGAGGTTTGACTGATTTTTCTACCATAACAATACTAGCACCTAATAAAATCTTATTAGGATAGTTAAATGATGAAATTCGCTCATTCATTAAAATCATATTTATTGAGCAAATACTATGTTTCCAGCTCTGTGATAGGCTCAGGAGAGACGAAGATAAAGACTCTCTTAGTACGTTAATAGTTATGGAAGGAAATGGCTCAGAAAAGCCTGAAATTTAAGTAATGTGTATATTTCAGTTATTGATAACTACTATGAGAAAAGTGCAAAACAGCAATGGCCTGTCATGCTAGGTAAGAAGGCTGCTAGTTTGGCTTAGATGTGTAAAGTGGTCTTTTCTAGGGAGGCGATATTTGAGTTGAGATCTAAATGAAGAGAAGGATGGTCAAATGAACTCCTCGTAAGAGCACTTCAGGCAAAGAGAGAGGTCTCTGAGTGCTCACAATGGGCTTGGCATGTACAAGGGAAAGAGAAAAAGACAGTATAATTGGTATTTGATGGATTAGAGAGGGTATAATAAGAAATGAAGCCAGAGAGTTGGCCTGGGGGCAGACCATGGATCTCTTTGGACATGCCAACAAGTTTGGGTTTTATTCTGATTGAGGTGGGTCATATATTGTGTCATTTATTCTTCACAGCCACCCATGAGGTTAATTTTATTCCTATTTATAGATGAAGTGCCTGAAGCTTAGAGGGGGCTTAGTTAAGGTCACATAACTGGTAAGTGATAGGGCTGGGGTTTGACCACCTGCTCTGGATGCCAGGATCTGTCCTTTTCAGCTACAGCTGCTCCTTGGAAGCTGCCAGTAGAAAATCTGCTGGATGCTTTTCAGTGATTCTGGTGTAAAACTTCAAAGGATGCTTTGGGTGTTTGTGAGAGCAGATTTGAAAGATGGTGGTGGTAACAAATTGGGTCCAACTCTATAGGTCCTGTGAGTTCAGGGTAAAGGATGAGGTGCTTTTGCTCTAGAGAACCCTGGATCCAAAGGAGAGGAACCGTGCAGAGTCTGAGGGGAACTGCTGGTAGTTAGAGTCAGAAAGCATGTTCCACATGGGTGAAGAGGGTAGACCACAGGTAAATAGGGGTTGTAGATGGAGGTAACTGTTGGAAATCCGGGAAAATGGGAGACAGTCTGTACAAATACTGAGGAAAATGGCCAAATCAATGGTTGCAGTTTTGCCCATACACATCTATTGCTTCAGCAGGTCAAACTGACATTCAATCCCAATGAAACAGATTCATATGGATTCCCACTATTTCTCAGAGAGTCAAGATCACCTTAAGGAGAAAACAGACAGTATATAGCTTGCTACCACCTGATTATTCCTGGCATGATGCTATTAGAAGTAGAAGACTGATCTCCACATTTAATGCTTTTACCATGCCTTGAAAAATTCCTTGCATCTTTATAGAGAGGTACAGCTTAATTACAAGAAGGAACTTGAACCAACACTTTAAAAATTGGTGTGTGATTCACAAATGAAATTTTTAAATCATATTCAGATTGATGGTTTAGTAGTCAAAATAAAAGCCTTTAACTTGAACACACAGAACAAATCAAATCACTCAGAATAGAACAAGTATTTTATTTTTAGAAATGTGTGTGGTGTGGGAAGAACAGAACACTGGTAAGTTGATAATTCTAGGATTAGAGTTTGTAAACTGAATGTTTTGAGATAAAGAATCATATGAAGGTTATTATGTCATAGTAGTTGTACTTCTGTTTCTTCTAGTACCAAAATTATAAGGAGATTTACAGAGGTAAAGGCTCCTAGAATCCTATGGAGGAAAGGATTTCTCCCTCTTTCAAGAAGTAGCATGTTAATTCCATGGTTGTGAAAGCCCCTAGAGCCTATTATTTCTGTTGTTGTGCCCCTTGTGTTCAGCATGGTTTCTAGAATCTGGTACATAGTAGATGCCCAATAAATATTTACCAAATGAGTGAGGTCATTCAGCCCATCCCCACAAGAACAGATTCTAGTAGAGAGCAGCCATCATTGTCACATAGTGACTTCTATAAAATAAGCTATAGTTTACAAATTAACTAGGATCCTTTCTTTTAGCCACCTTCTCAAGGGGAGTTTTCCCCCATTTTCTTTCTCTGTTATCAGAAGATTTGGCTTTGGTCCAGCTACTCGAAGTGCCATGAGAACTGTAACATTTGTATTTCGTTTTTAGTATAGTATGTGCTCAAAGTGTAGTACTCTGTAGTATGGTACTTATTTAAACGAATCACTCATGTTACTCACTCCCCACCTTCCTCTTCTTTTTTTTTTCCTTAAAACAG
Seq C2 exon
GATAGAGACTCTTAATGGAACAATGATTCTGAAAAGAACGGAGCTTGAAGCAAAGCTGCAGGTTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115165:ENST00000264192:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
NA
C2:
PF0059519=PDZ=PD(4.6=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development