HsaINT0046720 @ hg19
Intron Retention
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6472900-6475410:-
Coord C1 exon
chr19:6475285-6475410
Coord A exon
chr19:6473005-6475284
Coord C2 exon
chr19:6472900-6473004
Length
2280 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AACTCCAACGCTTCTTCCAGGGC
3' ss Score
5.52
Exon sequences
Seq C1 exon
GTGTCCCTGCTGAGGCTCCGGCTCAGGAAGGTCGCCCTGGCCCCCGGGGAAGGGGTGTCCCGTCTCTTCCTCAAAGCCCAGGCCCTGCTCTTCGGGGGGTACCGCGACGCACTCGTCTGCAGCCCG
Seq A exon
GTGAGCAGCGGGGACGCTGCGGGAGAGGTCTCGTGGGTTCCTGAATGAATCGCAATGTAACGATAGGTACAGTAGATGGCCGGACGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGATGCCGAGATGGGAGAATTGCTTGAGCCCAGAAGTTCAAGACCAGCCTGGGCAACACAGTGAGACCCCTCCCGTTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGAGTTTCACTCTGTTCCCCAGGCTGGAGTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGACTCCCAAGTAGCTGGGACTGCAGGTGCGCACCACCATGCCCAGCTAATTTTTGTAGTTTTAGTAAAAACGGGGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCATCAGGCTCCTAAAGTTCTGGGATTACAAGTGTGAGCCACCATGCCCGGCCACCGTCTCTATATATTTTTTTAATTAAAAAATAATAATGATAGGTAGCATTAATGGAGTGCTTACTTTGTGCCTCTGTTTGCCCCTCTGTAAAATGGGACCCCAATAGTGCCACCCAAAAGGATATTAGAATCAGTGAATCAGCATTTTCCCAGCACTTTGAATCGTACCTGACATACAGCAAGCACTCAATAAATGCTAGCTCCTACCACTGCTATTATCTCATTTAATGCTCATAACATTTTGAGATGGATACTGTGATAGTCCCATTTTCCATATGAGGAAACCAAGGCTTTGGAGAAGTCCCACAGTGGGTGAATGTTGAAGCCGGGGCCTTGATCTCTGAAGCCCCCTCCCCTGTTTTTCACAACCAATCTGTAAAATCATTGGGGGGTTCTAGTATCACTTGAGCATCTGACGTTTTTGTCATCTCTGCATCCTGAATCTGCACACAGACCACCCACTTCCTCTGTCTCCACCCTGGCCTGGACCCTCTCATTGTTTGCCTAAAATTAATGCACTGATCTCTCCCAAAAACTGGGACTCCCCCGCAAGCAGTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTCTCTTGAGACAGAGTCTTGCTCTCTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGCATGCACCACCACAATGGCTAATTTTTTGTATTTTTAGTACAGATGGGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCAGACCTCAGGTGATCCATCCATCTCCTCTTCCCAGAGTGCTGAAATTACAGGTGTGATCCACCGCGCCCGGCCTCCTGCAAGCAGCCCTCTGCTTTATCTCCCAGAGTCTGTCCTCCCTGCAGTGGCCAGAGGTCACCTGTGAACACCCGAGTCAGATCATTTCCCTCCCCCCACCCCCCCGCCCACACCCCTCCCGGGCTTCCACCTTACTCGAGATAAATGCTTAAATCAGCCGGGTCGGTGACTCACACTTTTGAGAGGCCAAGGTGTGTGGATTGCTTGAGCCCAGGAGTTTGGACCAGCCTGGGAAACACAGTGAGACCCTGTCTCTACAAAAACTACAAAAATTAGCTGGGCGCAGTGGCGTGCACCTGTGGTCCCAGCTACTTGAGAGGCTGAGGTGGGAGGATCGCTTGAGCTCAGGAGGCAGAGGTTGCAGTGAACCAAGATCACACCACTGCACTCCAGCACGGGTGACAGAGTGAGACCCTGACTCAAAAAAAGAAATGAAAAAAAAAAAAAAAAAAACCAGGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAAGAGATGGAGACCAACCTGGCCAACATGGTGAAACCCAGTCTCTACTAAAAATACAAAAATTAGCTGGACATGGTGGCACGTGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAGGAGAATCGCTTGAACCCTGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGCCACTGCATTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAACAAACAAACAAACAAAAAACAGCTTAAGTCCTCCCTGCCATCCATGAGGCCCCACACAGGATCAGACACACAGCAAGTGCCTAATCAATGTTTGCTACATAAATATATAGTAGAATGAGGGAGGGCCAGGAGCACCCCAGGGAGCTCAGAACTCCAACGCTTCTTCCAG
Seq C2 exon
GGCCAGCCAGTGACCTTCAGTGAGGAAGTCTTCTTGGCCCAGAAGCCTGGGGCACCTCTGCAGGCCTTCCACCGGCGGGCTGTGCACCTGCAGCTGTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-DENND1C:NM_024898:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(39.7=64.3)
A:
NA
C2:
PF0345514=dDENN=FE(50.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)