HsaINT0046720 @ hg38
Intron Retention
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6472889-6475399:-
Coord C1 exon
chr19:6475274-6475399
Coord A exon
chr19:6472994-6475273
Coord C2 exon
chr19:6472889-6472993
Length
2280 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AACTCCAACGCTTCTTCCAGGGC
3' ss Score
5.52
Exon sequences
Seq C1 exon
GTGTCCCTGCTGAGGCTCCGGCTCAGGAAGGTCGCCCTGGCCCCCGGGGAAGGGGTGTCCCGTCTCTTCCTCAAAGCCCAGGCCCTGCTCTTCGGGGGGTACCGCGACGCACTCGTCTGCAGCCCG
Seq A exon
GTGAGCAGCGGGGACGCTGCGGGAGAGGTCTCGTGGGTTCCTGAATGAATCGCAATGTAACGATAGGTACAGTAGATGGCCGGACGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGATGCCGAGATGGGAGAATTGCTTGAGCCCAGAAGTTCAAGACCAGCCTGGGCAACACAGTGAGACCCCTCCCGTTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGAGTTTCACTCTGTTCCCCAGGCTGGAGTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGACTCCCAAGTAGCTGGGACTGCAGGTGCGCACCACCATGCCCAGCTAATTTTTGTAGTTTTAGTAAAAACGGGGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCATCAGGCTCCTAAAGTTCTGGGATTACAAGTGTGAGCCACCATGCCCGGCCACCGTCTCTATATATTTTTTTAATTAAAAAATAATAATGATAGGTAGCATTAATGGAGTGCTTACTTTGTGCCTCTGTTTGCCCCTCTGTAAAATGGGACCCCAATAGTGCCACCCAAAAGGATATTAGAATCAGTGAATCAGCATTTTCCCAGCACTTTGAATCGTACCTGACATACAGCAAGCACTCAATAAATGCTAGCTCCTACCACTGCTATTATCTCATTTAATGCTCATAACATTTTGAGATGGATACTGTGATAGTCCCATTTTCCATATGAGGAAACCAAGGCTTTGGAGAAGTCCCACAGTGGGTGAATGTTGAAGCCGGGGCCTTGATCTCTGAAGCCCCCTCCCCTGTTTTTCACAACCAATCTGTAAAATCATTGGGGGGTTCTAGTATCACTTGAGCATCTGACGTTTTTGTCATCTCTGCATCCTGAATCTGCACACAGACCACCCACTTCCTCTGTCTCCACCCTGGCCTGGACCCTCTCATTGTTTGCCTAAAATTAATGCACTGATCTCTCCCAAAAACTGGGACTCCCCCGCAAGCAGTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTCTCTTGAGACAGAGTCTTGCTCTCTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGCATGCACCACCACAATGGCTAATTTTTTGTATTTTTAGTACAGATGGGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCAGACCTCAGGTGATCCATCCATCTCCTCTTCCCAGAGTGCTGAAATTACAGGTGTGATCCACCGCGCCCGGCCTCCTGCAAGCAGCCCTCTGCTTTATCTCCCAGAGTCTGTCCTCCCTGCAGTGGCCAGAGGTCACCTGTGAACACCCGAGTCAGATCATTTCCCTCCCCCCACCCCCCCGCCCACACCCCTCCCGGGCTTCCACCTTACTCGAGATAAATGCTTAAATCAGCCGGGTCGGTGACTCACACTTTTGAGAGGCCAAGGTGTGTGGATTGCTTGAGCCCAGGAGTTTGGACCAGCCTGGGAAACACAGTGAGACCCTGTCTCTACAAAAACTACAAAAATTAGCTGGGCGCAGTGGCGTGCACCTGTGGTCCCAGCTACTTGAGAGGCTGAGGTGGGAGGATCGCTTGAGCTCAGGAGGCAGAGGTTGCAGTGAACCAAGATCACACCACTGCACTCCAGCACGGGTGACAGAGTGAGACCCTGACTCAAAAAAAGAAATGAAAAAAAAAAAAAAAAAAACCAGGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAAGAGATGGAGACCAACCTGGCCAACATGGTGAAACCCAGTCTCTACTAAAAATACAAAAATTAGCTGGACATGGTGGCACGTGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAGGAGAATCGCTTGAACCCTGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGCCACTGCATTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAACAAACAAACAAACAAAAAACAGCTTAAGTCCTCCCTGCCATCCATGAGGCCCCACACAGGATCAGACACACAGCAAGTGCCTAATCAATGTTTGCTACATAAATATATAGTAGAATGAGGGAGGGCCAGGAGCACCCCAGGGAGCTCAGAACTCCAACGCTTCTTCCAG
Seq C2 exon
GGCCAGCCAGTGACCTTCAGTGAGGAAGTCTTCTTGGCCCAGAAGCCTGGGGCACCTCTGCAGGCCTTCCACCGGCGGGCTGTGCACCTGCAGCTGTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744:ENST00000381480:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(39.7=64.3)
A:
NA
C2:
PF0345514=dDENN=FE(50.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development