HsaINT0046734 @ hg19
Intron Retention
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6477229-6477469:-
Coord C1 exon
chr19:6477389-6477469
Coord A exon
chr19:6477295-6477388
Coord C2 exon
chr19:6477229-6477294
Length
94 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GAGTCGTGCCTCTTCCCCAGGGC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GTCACCGAGGCAGAGGAACTTCTTCAAAATCTGTTTCAGCAGTCCCTGTCTGGGCCCCAGGCCTCAGTGGGGCTTGAGCTG
Seq A exon
GTGAGTAGCTCCCATTCCCTGGGCGCTGGACCTTAGGTGGATGGGAAGGCTGCGTCCCAGCCATCATGACCACAGAGTCGTGCCTCTTCCCCAG
Seq C2 exon
GGCAGCGGAGTGACGGTCTCCAGCGGGCAGGGTATCCCCCCCCCTACCCGGGGGAATAGCAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-DENND1C:NM_024898:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.318
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
NA
C2:
PF0214116=DENN=PD(10.3=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGAGGCAGAGGAACTTC
R:
CTTGCTATTCCCCCGGGTAGG
Band lengths:
143-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)