MmuINT0048257 @ mm10
Intron Retention
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57074114-57074354:-
Coord C1 exon
chr17:57074274-57074354
Coord A exon
chr17:57074180-57074273
Coord C2 exon
chr17:57074114-57074179
Length
94 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CAGTTACTCTCGTCCCACAGGAC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTCGCCGAGGCTGAAGAACTCCTACAAAACCTACAGCAACACCCACTTCTTGGACCCCGGTTTTCAGGAAGATCAGAGATG
Seq A exon
GTGAGTAGCTCCCAGGTCTTTGGCGCTGGCTTCTGGTTGGCCATGAAGGCTTCGAGCCAACCTGGGAAACCACACAGTTACTCTCGTCCCACAG
Seq C2 exon
GACAGCAGCATCACTGTCCGGAGTGAATGTGGAATCTTGCCTCCTGCCCTGGGGAATAGCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668:ENSMUST00000011623:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
NA
C2:
PF0214116=DENN=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGGCTGAAGAACTCCTA
R:
CAGCTTGCTATTCCCCAGGG
Band lengths:
144-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types