HsaINT0047412 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46395949-46396216:+
Coord C1 exon
chr11:46395949-46396004
Coord A exon
chr11:46396005-46396153
Coord C2 exon
chr11:46396154-46396216
Length
149 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACGCCCTCTGTCTCCCACAGACA
3' ss Score
11.21
Exon sequences
Seq C1 exon
AGGCCAACCCAGAGAAATTCAACAGCCGCTTTCGGAATAAGATGTTCTACGCCGGG
Seq A exon
GTGAGTGGGGTCTGCACCCCCGCCTGTGCCCACCTCTTCTACCACCCGTGCCCGTGCCCACCTGTGTCCACCAGGCCCCAGGAGCCCTGCCGGGTGCTGGTGAGGAAAGATCTCTGTCAGCAGATGGTGACGCCCTCTGTCTCCCACAG
Seq C2 exon
ACAGCTTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACCTGGCCAAGCACATCCGAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(11.4=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCAACCCAGAGAAATTCA
R:
CACCACTCGGATGTGCTTGG
Band lengths:
119-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)