BtaINT0048711 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77243351-77243743:+
Coord C1 exon
chr15:77243351-77243406
Coord A exon
chr15:77243407-77243566
Coord C2 exon
chr15:77243567-77243743
Length
160 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACGCCCTCTGTCTCCCACAGACA
3' ss Score
11.21
Exon sequences
Seq C1 exon
AGGCCAACCCGGAGAAGTTCAACAGCCGCTTCCGGAATAAGATGTTCTACGCCGGG
Seq A exon
GTGAGTCCGGGGCCTGCTGCTGCGCCGAGCCGTTGCCACGCCCACCCGTTCTCCCACCCATGCCCCCACCCACCCGTGTCCACCAGGCCTCAGGACCCCTGTACGGCAGCGGGAAGGACATGCCCTGTTACCAGATGGTGACGCCCTCTGTCTCCCACAG
Seq C2 exon
ACAGCCTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACTTGGCCAAGCACATCCGCGTGGTGGTGAGCGGGCTGTGCCCGCAGGCAGGGTGGGTGGGTCCGGCGGGAGGGATACCCCCTGGGTGCATATGCCCTCAACCCCGTCCGCCCGTTCCTGCCTGCAGTGTGATGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(25.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=PD(40.0=47.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCGGAGAAGTTCAACAGC
R:
CAGTCCCATCACACTGCAGG
Band lengths:
228-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development