RnoINT0047098 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80849501-80849737:-
Coord C1 exon
chr3:80849682-80849737
Coord A exon
chr3:80849564-80849681
Coord C2 exon
chr3:80849501-80849563
Length
118 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
GTACCCTCTGTCTTCCACAGACG
3' ss Score
11.31
Exon sequences
Seq C1 exon
AAGCCAACCCAGAGAAGTTCAACAGCCGCTTTCGGAATAAGATGTTCTATGCTGGG
Seq A exon
GTAAGTCTGGGGCCAGCCAGCCCCCAGCTTCCTGTGTGCAGGTCACAGGAGCCCTATGACTCCGTGGTGAGAGAAGGCCCCTGTCACAAGATGACGGTGTACCCTCTGTCTTCCACAG
Seq C2 exon
ACGGCCTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACTTAGCCAAGCACATCCGAGTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(11.4=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACCCAGAGAAGTTCAACA
R:
CACTACTCGGATGTGCTTGGC
Band lengths:
117-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]