HsaINT1010968 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46374399-46374666:+
Coord C1 exon
chr11:46374399-46374454
Coord A exon
chr11:46374455-46374603
Coord C2 exon
chr11:46374604-46374666
Length
149 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACGCCCTCTGTCTCCCACAGACA
3' ss Score
11.21
Exon sequences
Seq C1 exon
AGGCCAACCCAGAGAAATTCAACAGCCGCTTTCGGAATAAGATGTTCTACGCCGGG
Seq A exon
GTGAGTGGGGTCTGCACCCCCGCCTGTGCCCACCTCTTCTACCACCCGTGCCCGTGCCCACCTGTGTCCACCAGGCCCCAGGAGCCCTGCCGGGTGCTGGTGAGGAAAGATCTCTGTCAGCAGATGGTGACGCCCTCTGTCTCCCACAG
Seq C2 exon
ACAGCTTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACCTGGCCAAGCACATCCGAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(11.4=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCAACCCAGAGAAATTCA
R:
CACCACTCGGATGTGCTTGG
Band lengths:
119-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains