HsaINT0047413 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46396154-46396389:+
Coord C1 exon
chr11:46396154-46396216
Coord A exon
chr11:46396217-46396315
Coord C2 exon
chr11:46396316-46396389
Length
99 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CCCTCCCCGCCCGCCTCCAGTGT
3' ss Score
7.71
Exon sequences
Seq C1 exon
ACAGCTTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACCTGGCCAAGCACATCCGAGTGGTG
Seq A exon
GTGAGCGGGGCCAGGCTGCCGTGGGTGGGTGGGCCGGAAGGGAGGGAGGCGGAGGCCACCTGGCACATGCACCTCAACACCCTCCCCGCCCGCCTCCAG
Seq C2 exon
TGTGATGGAATGGACTTGACTCCCAAGATCCAGGACCTGAAACCCCAGTGTGTTGTTTTCCTGAACATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTTCTCTGACTTCCTGA
R:
TGGGGATGTTCAGGAAAACAACA
Band lengths:
136-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)