GgaINT0054696 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25817273-25817658:-
Coord C1 exon
chr5:25817596-25817658
Coord A exon
chr5:25817347-25817595
Coord C2 exon
chr5:25817273-25817346
Length
249 bp
Sequences
Splice sites
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
3' ss Seq
GCCTCTTTGTTTGTCTCCAGTGT
3' ss Score
9.48
Exon sequences
Seq C1 exon
ACGGCTTTCTCCGACTTCCTCACAGGGAGCTCCAAAGATTTAGCGAAGCACGTCAAGTTGGTT
Seq A exon
GTGAGTGTGTGGCAGTGCTCTGGGCCAGGGAGGGGGGCAAACTGCATAGGGAGTGAGGAGCAGCCGCTCTAAGCACACTGAGTGTCTTAGGGCTAGGGGAGAGGGTGTGTTCCTTGGGGCATCACCTTCCCTTGGCTTGGAGGATGGTTGCCCTGAGGAGCAGAGTGGGAGGTCATTTCACCCTGGATAGCTAGGGTGGGCCAGACTCCTTCCTCATAGTAACCTAAGTGCCTCTTTGTTTGTCTCCAG
Seq C2 exon
TGTGATAGCGTGGACCTGACCCCCAAGATCCAGGACCTGAAGCCACAGTGTTTGGTCTTCCTGAACATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTCTCCGACTTCCTCAC
R:
TGGGGATGTTCAGGAAGACCA
Band lengths:
134-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]