HsaINT1010969 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46374604-46374839:+
Coord C1 exon
chr11:46374604-46374666
Coord A exon
chr11:46374667-46374765
Coord C2 exon
chr11:46374766-46374839
Length
99 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CCCTCCCCGCCCGCCTCCAGTGT
3' ss Score
7.71
Exon sequences
Seq C1 exon
ACAGCTTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACCTGGCCAAGCACATCCGAGTGGTG
Seq A exon
GTGAGCGGGGCCAGGCTGCCGTGGGTGGGTGGGCCGGAAGGGAGGGAGGCGGAGGCCACCTGGCACATGCACCTCAACACCCTCCCCGCCCGCCTCCAG
Seq C2 exon
TGTGATGGAATGGACTTGACTCCCAAGATCCAGGACCTGAAACCCCAGTGTGTTGTTTTCCTGAACATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(15.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTTCTCTGACTTCCTGA
R:
TGGGGATGTTCAGGAAAACAACA
Band lengths:
136-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains