HsaINT0048105 @ hg19
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47977498-47978306:+
Coord C1 exon
chr21:47977498-47977666
Coord A exon
chr21:47977667-47978135
Coord C2 exon
chr21:47978136-47978306
Length
469 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACCGCTCACCCCTCCCGCAGATG
3' ss Score
12.35
Exon sequences
Seq C1 exon
TGTCTACTCGGGACACCAATCAGTGCTGGTGCCCCCGCTGGAGCTGGAGAGCAACGTGTCCCTGTGGCTGTCGGCCGTCAGCCAGTACAAGGCCCGCGTCACCTTCTGCTCCTACTCTGTGATGGAGATGTGCACCAAGGGCCTAGGCGCACAGACGGGTGTCCTCAGG
Seq A exon
GTGAGTGCCCAGACCCGGGCTTCTGAGTGTGCTGCAGACCACAGCCCTGGGAAGTTTAAAAACAACAAAACAAAACAAGACTCCCAAGGCCCCTCCCTGCAGTTGGAGGAAGTAGAGAAAACCCTTTCCCACTAGGGGCCCTATGTACACATCTGTCCTCCCACGGCCCACCTGTCTCTGCAGCTCCACACCCCGCAGGAGAGGAGGGTGGGGGGTAGGGCAGGGTCCCTGCGAGATAGCGGGGTGGAAGTCTGGCCGCGTGGGAGGGCAGGTGTGGGATGCAGGTCAGATGGGAATCGTTTAGCGCATCCACACGTAGGATTCTGTGGAACAGACACAGCCTGCGGAGAGGAGGTTGGTGTCCAGCTCCACCTCTGTGTGCCCACCCGGAGATTTCCCAAAACAGTGCCCAGGGCCCTGGCAACTCACTGAGCTGTGGCCGTGGCCTGACCGCTCACCCCTCCCGCAG
Seq C2 exon
ATGAAGGGGGTGAACCTGTCATGTGTGCGCACGTGCATGGTGGTCGCCGAGGAGCGGCCCAGGATTGCGCTGACCCAGTCCTTCTCCAAGCTCTTCAAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTTCGGGTGCAGGGTCAACGTGGCCATCTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-DIP2A:NM_001146116:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACTCGGGACACCAATCA
R:
GCAGATGGCCACGTTGACC
Band lengths:
334-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)