GgaINT0051036 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6910409-6911659:-
Coord C1 exon
chr7:6911491-6911659
Coord A exon
chr7:6910580-6911490
Coord C2 exon
chr7:6910409-6910579
Length
911 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GTATCATTTTCTGCATTCAGATG
3' ss Score
8.23
Exon sequences
Seq C1 exon
TGTATATTCGGGTCATCAGTCCATTCTTGTCCCTCCTCTGGAGCTGGAGAGCAACGTGTCTCTGTGGCTGTCTGCTGTAAGCCAGTACAAAGTGCGTGTCACTTTCTGTTCTTACTCAGTGATGGAGATGTGCACCAAAGGGCTTGGGACACAGACTGATATGCTCCGG
Seq A exon
GTAAGTGAGTTTAACTGTTCAACACGCTGACGTACAATTTCACATACCTTAGGAAGACTAAAAAAAAACAACAAAAAAGAGAGAAATCATAAACCCTTGCCCTCTGCCCACCCCCCACTCCAGTCCCACATCTGGCAGGTCTCACTGGTTTTCAAGTCTCTGTGCATCAGAAGTATTGAATTGAAAAATTATGTCATCTTCCTATAAGCTACAGTTACATGCTTATACACCCATTTATGTTTGAGGGAATGTCTTAACTGAGGTTTAATTTATTTGAGAAAGCACTTCTGTCTCTTCTGTAGCAGAGTTCTTACGGCTTTCATAACTAGGGTGCTCAGTGCTTCTGCTGAGAATGTTTGGCAGCTTGTTACATGCAAGAAGGTGATGATATTGTGCTTATTCTTAGCACAAACAAAAAAAAACAAACAAAAAAAACTGTCCCTTTGTCCTCCTGGACCTCATTAGAAGGAATCATGGCCCACAAGCAGTTGTTACAAGTTCATGTTCATGCTGGTGAGCACTTGTAATGTCTCAAGTGCTTTTCCTGTATCTGGACTGTGCAGCACTTGAAGCAGGTAGGTCTCTTGTGATCTTCACATGGTTGCCTGTCCAGCCCTAAGACAAAACACAATTTGTGTTTTCTTAGCTCAGAAAGATGAATGGCTGTGTTGCAGCTACGTGACAGGAGTGGTTTGCATTTTGCCCATCTAATTCTGCCTCCAAACTGCTTGGCACAGTTTTAGAGGATTCTCTTGGGTGGACGGAACCAAACTGAGTGCAGTCTACATCCATATTGTTTATCGAGTTCATGTCAGTTATGCTGATACTTTAAAGTCAGTTCCACAAATTGAAATGGCCCATTTCTAGAAGTGCTGATGTCAGATTTAAAATGTATCATTTTCTGCATTCAG
Seq C2 exon
ATGAAAGGAGTCAATCTGTCCTGTGTGCGAACATGCATGGTGGTTGCAGAGGAGAGACCAAGGATTGCATTAACACAGTCTTTCTCCAAGTTATTCAAAGACCTGGGTCTCTCTGCTCGTGCAGTGAGCACTACGTTTGGATGCAGGGTCAATGTAGCAATTTGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATATTCGGGTCATCAGTCCA
R:
GCAAATTGCTACATTGACCCTGC
Band lengths:
334-1245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]