RnoINT0047719 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13118993-13119634:+
Coord C1 exon
chr20:13118993-13119161
Coord A exon
chr20:13119162-13119463
Coord C2 exon
chr20:13119464-13119634
Length
302 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GACTTCTTGCTCTTCTGCAGATG
3' ss Score
10.35
Exon sequences
Seq C1 exon
CGTGTACTCTGGACACCAGTCGGTACTCGTCCCCCCACTGGAGCTGGAGAGCAATGTGTCTCTCTGGCTGTCCGCCGTCAGCCAGTACAAGGCCCGAGTCACCTTCTGTTCCTACTCAGTGATGGAAATGTGCACCAAGGGCCTTGGTGCTCAGACAGGCGCCCTCAGG
Seq A exon
GTAAGTGTGAAGCAGGCCTTTAGAGCCACGGGGTTCTTCCAAGCCCACACACTTCTGCCAAGCACTCTTCCCTAACCAGGGAGGAGGGTACCTAAGTGGGCAAGGCAGAGGGGGCCATAGACTTTAGGGCACTCAGCAGTGCTTCTGTCTTAGGACTCCCCGGGTGGAGGCAGAGCTGGAGGAAGCAGGGTGTTCAAACCCGCTTTTGTGTATTCGGATCTACAGACAGAGGCCCAGGCTGTCGGGTCAGCACTGAGGGCCCAGACTGTGTGTGCGCAGGATGACTTCTTGCTCTTCTGCAG
Seq C2 exon
ATGAAGGGGGTGAACCTGTCGTGTGTGCGCACGTGCATGGTGGTGGCTGAGGAGCGGCCCCGGATCTCGTTGACACAGTCCTTCTCCAAGCTATTCAAAGACCTGGGCCTCCCTGCTCGCGCTGTGAGCACCACCTTCGGGTGCAGGGTCAACGTGGCCATCTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACACCAGTCGGTACTCG
R:
GCAGATGGCCACGTTGACC
Band lengths:
326-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]