HsaINT0048735 @ hg19
Intron Retention
Gene
ENSG00000144355 | DLX1
Description
distal-less homeobox 1 [Source:HGNC Symbol;Acc:2914]
Coordinates
chr2:172950208-172951581:+
Coord C1 exon
chr2:172950208-172950718
Coord A exon
chr2:172950719-172951381
Coord C2 exon
chr2:172951382-172951581
Length
663 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TACTTCTGCTGTCCCTCCAGGGG
3' ss Score
9.67
Exon sequences
Seq C1 exon
AAGCTTTGAACCGAGTTTGGGGAGCTCAGCAGCATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGAGGAGAGAAAGTCCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCGGGCAAGGCGGTGTTTATGGAGTTTGGGCCGCCCAACCAGCAAATGTCTCCTTCTCCCATGTCCCACGGGCACTACTCCATGCACTGTTTACACTCGGCGGGCCATTCGCAGCCCGACGGCGCCTACAGCTCAGCCTCGTCCTTCTCCCGACCGCTGGGCTACCCCTACGTCAACTCGGTCAGCAGCCACGCATCCAGCCCCTACATCAGTTCGGTGCAGTCCTACCCGGGCAGCGCCAGCCTCGCCCAGAGCCGCCTGGAGGACCCAG
Seq A exon
GTACGTGCGCTTGCCAGGGAGAGGGAGAGGAGGAGGTACAAGGGAGAGAGGGAAAGAAGGAGCGGGGGAGAAGAGGAGAGGGAGAGAGAGAGAAAGAGAAGAGAGGAGAGCGAGGTGGGGTGGGGGTGGGGAGGGCGCGGGAGCAGTGGAGGTTTCGAATATCAATCTATAGATCCTTGTCACAGCAAATAAATTTTTTTAAAAATTCCCTCAATTTGCAACTATCCAGCCAAGGATAAATCCCAGAGCGTCTCCTGGCACTGGCTGGGCCTCTGGGCGGCTCGGTGTGCAGAGCACACAATGCCCCGCTGGAAAACAGAAACCCACATGTGCACGTATTAGTCTCGGTAATTATTTATTGCGTAGCGCTATAAACAATGTATGCAATTAAGGGTAATTAAACCTCAACTACCGCCTGCAAAAATAGCAAACTTTCCCTGCAAAGGCAGGAGCTGAGCTCCTGGGAACGGCTCTATCCCTCCTGCAGCGTCCCGGGACAGGCCCTCGGATTTTGGGGGACCCTTCCCTGGCTTTCAGAGTTTCTTGAACGTTCTCTCCCTGGTGCTGCCTCCGCCACCCTTCGGTAGCCACTCGCTCTCGGCTGTTCGCACTAAAGGCGGCCCCTCGTATTAACAACGGGCCCTACTTCTGCTGTCCCTCCAG
Seq C2 exon
GGGCGGACTCGGAGAAGAGCACGGTGGTGGAAGGCGGTGAAGTGCGCTTCAATGGCAAGGGAAAAAAGATCCGTAAACCCAGGACGATTTATTCCAGTTTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGCTCTGCCGGAGAGGGCGGAGCTCGCGGCCTCTTTGGGACTCACACAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144355-DLX1:NM_178120:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=NA C2=0.315
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTACTCCATGCACTGTT
R:
CGGCAGAGCTAGGTACTGAGT
Band lengths:
356-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)