MmuINT1008664 @ mm10
Intron Retention
Gene
ENSMUSG00000041911 | Dlx1
Description
distal-less homeobox 1 [Source:MGI Symbol;Acc:MGI:94901]
Coordinates
chr2:71528113-71531156:+
Coord C1 exon
chr2:71528113-71530306
Coord A exon
chr2:71530307-71530956
Coord C2 exon
chr2:71530957-71531156
Length
650 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TGCTTCTGTTGTCCCTCCAGGGG
3' ss Score
11.58
Exon sequences
Seq C1 exon
TGCCAAAATGTGCTTGATTACAGAGGTCTCCCTGTGATCACTGTGCACTCCAGATAGGGGAAGGTGCCGCGGCGCAGGTTCAGCTCAGGCCAGATCAAATCCCCGGGCTGTTTAACGCTGAAAGGCTGCATGTTGCTATTAGTGTTAAATATATGGCTAATTATGCGTATGAAAATTAAACATCAGTGTTATGCTAATGGGGCGCCTTCAGCTGCGGATCTGAGCACTTGAGACTACCATTTAATCAAATGAATCAGTAACTAATACGTGTGCACGTGTGAACTTTCACAAGATCATTTCCCCCGGTCCCCGTCACACCGCTAAATTATGAAAGAAATAATTATCAACACTTTCTAATTACCTAACAAAGTAATTTGGGATTCATCGTGGGGCTGGCGGGATTGGGAACCAACAGTCCCTAGCAACCAGCGTAGTTTGCGCCACGCGAGGTGGTGTGTGGTAGTAGTGGGGGGGTGGAGTGCGAGAGAATCTTTTGTGCACTTTTCAACACTTGCACCCAGATGGTAGACAGCGCGCTTTGGCAGCTCTTTCCTTCACCAGCTTCCCCACCTCACCCCCGGGCCCGGAGGCTCCAGCTTTGGCCACTGGAGGTGAGGAAGAGATCGGGCGACAGAGAGGGGCATATCTAAACACAAATATTCAAGCCTACCACTGATCAGGATTTGCTGAGGGTGTCGGTGTCTCCCTAGGACTCCCAAACCCCAAGTACTCTGGCCAGACCCCAGGAGGTCGGAAAATGACCACCTGGCAGGAGTTCGATGCACCAGCCACCAGGCGACTGCGGGCCCTCAGGACTCCACGCTGAGCCGCGCCCTCGGGGCGAGTGAGCCCGGGGCTCGTGGCTCAGGGGGAGTGGAGAGGGGAGGGGGAGGCAGGAAGGTTGGGAGGGAAAGGAGGGGGGAGGCGGTGCGGCCGCCTTTCCTGGGTGGAGAAGCGTGGGTTCCTGGCTCTCCACGCGCACTGCTTTGATCAGACCCGTGCAGCCTCGAGCTGGAGTGGCCAGCTGGGCCTGGAGAGATGCGAGCAAGCCCCTGGGAACGGTGGCAACGGCGGGGCGGCGGCCGAGTGAGTGAGTTGGGCCAGAGGGCCCCCAAACCCAGATCCCCGGGATGTGGCCGAGAGAACCCCAACCTGGGAGGCGCGGCCTGGAGCGCGCTGAGCTAGGCACAAGACGCTCAGAAGGACCGCTGGCTGCAGGCTACCTGGGTTGTCGCCCAGTGCGCGACTCCGCGATCCAGAGACCGCGGCCGGACTCTGGAGCGGCGCTCCGCACCGGACTAGGTGACCTCAAGAAGAAGTGGTCCGGGGTCCCAGGCGTTGGGGGCGGGCGAAGGGTGGGGACAGCAAGGGGGAGGGCGACGGCAGGGCGCGGCTGGTTGGTTTCTGGGGCGGGAAGCGCGCGAGGGAGGCGGGAGGCTGGAGTCGCGCGCCTTCGAGGTTCCTGCGCGGACGCCGCAGCCCATTGTGCGTCCCGCTCCGCGCGCTCTGTTGCAGAGGAGCCCCGGCCGGGACGTGTGGACCGGATTCTCCCCAGGCCGGGCCGCGTCGCCCGCTCTAGTCCAGCCGAGCCCGAGCTTCTCGGACCAATCCCCGGTGATTATGCAAGAGAGCCGACCAATCAGCTCCACCAGCTCATGAATATTTATGACCTTGGCTGAGTCAAAGCTTTGAACCGAGTTTGGGGAGCTCGGCAGCATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGAGGAGAGAAAGACCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCGGGCAAGGCTGTGTTTATGGAGTTTGGGCCGCCCAACCAGCAAATGTCTCCTTCTCCCATGTCCCACGGGCACTACTCCATGCACTGTTTACACTCGGCGGGCCATTCGCAGCCCGACGGTGCCTACAGTTCGGCCTCATCCTTCTCCCGACCGCTGGGCTACCCCTACGTCAACTCGGTCAGCAGCCACGCGTCCAGCCCCTACATCAGTTCCGTGCAGTCCTACCCCGGCAGCGCCAGCCTCGCCCAGAGCCGCCTGGAGGACCCAG
Seq A exon
GTACGTGCGCTTGCCAGGGACAAGGAGAGAAGGGAAGGAGAATAGGAGAGAGGGGGAGAAGGGGAGGGGGAAAGAGAAAAGACAAGAGAGTGTGGGGTAGAGAGGTGGGTGGGGGTGGGGAAAGCGCGGAAGTAGTAGAGGTTTCGGATATCAATCTGTGGATCCTTGTCACTGAAAAGAAAAAAATTATAAGTCAATTCAATTTACAACTGTCCAGCAAAGGATAAATCCGAGCGCGTCTCCTGGCACTGGCTGGGCCTCTGGGCCGCTCGGTGCGCCGAGCACACAATGCCCTGCTGGAAAACAGAAACCCACATGTGCACGTATTAGTCTCGGTAATTATTTATTGCGTAGCGCTATAAACAATGTATGCAATTAAGGGTAATTAAACCTCAACTACCGCCTGCAAAAAATAGCAAACTTTCTCTGCAAAGGCAATAGCTGCGCTCTTGGGAACGACCCAATTCTGTCTGCAGCAGCCAGGGACGTGCGCTCGGACCTTGAGGGACCTTCGCAGTCTTTCAGGGTTTCTTGAACGTTCTTTTCCGGACCCTACTTCTGCCAACCCATCCATAGACATTCATTCTCGTCCCTCCTCACTAAAGGCAGTGCAGCATTAACAAGGGTCTCTGCTTCTGTTGTCCCTCCAG
Seq C2 exon
GGGCGGACTCCGAGAAGAGTACGGTGGTGGAAGGCGGCGAGGTGCGCTTTAACGGCAAAGGGAAAAAGATCCGTAAACCCAGGACAATTTATTCCAGTTTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAACAAACTCAGTACTTAGCTCTGCCTGAGAGGGCGGAGCTGGCGGCCTCCTTGGGACTCACACAGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041911:ENSMUST00000037119:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.348
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGAGAAGAGATGACCATG
R:
CCACCGTACTCTTCTCGGAGT
Band lengths:
352-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types