HsaINT0048786 @ hg38
Intron Retention
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122632861-122633341:+
Coord C1 exon
chr10:122632861-122632890
Coord A exon
chr10:122632891-122633190
Coord C2 exon
chr10:122633191-122633341
Length
300 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCCACTTTTTGTCCTGACAGCAG
3' ss Score
8.37
Exon sequences
Seq C1 exon
CTCCTTTTCTCAACATCACCCGTCCAAACA
Seq A exon
GTAAGTTCTGAGCTCCCTGACAAGTCTGTGGCAGAGTGGCCTGGAAATTCCCCTTCCCATTTCCTCAGTGACAATGGGGCTGGGGAGGAGATGGCTTCCCCCAAAGTGGTCTCCCTGCAAGAGTGCCCTGCCAGCCCTCAGTGGACGGTCCAGATCTAGGCCACCTCTTGCTCTTACTTGGTTTCTGTCTTGGGAATTATTTTATAAAATTTTAAAGTAATTTAAATTTAAAGTAGTCCGCAGGTAGACTGTGCAGTGTGCTCTGGGGGTCACCGACATTCCCACTTTTTGTCCTGACAG
Seq C2 exon
CAGATTATTCCTGCGGAGGCTTCCTATCCCAACCATCAGGGGACTTTTCCAGCCCATTCTATCCCGGGAACTATCCAAACAATGCCAAGTGTGTGTGGGACATTGAGGTGCAAAACAACTACCGTGTGACTGTGATCTTCAGAGATGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908:ENST00000338354:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(43.0=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development