MmuINT0050165 @ mm9
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138251969-138253149:+
Coord C1 exon
chr7:138251969-138251995
Coord A exon
chr7:138251996-138252998
Coord C2 exon
chr7:138252999-138253149
Length
1003 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTTCCCCTCTTTCTTGACAGTAA
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTTGGTGGACTACAAGTCCTTCCTATG
Seq A exon
GTAAGTATTTTATTTCTTATCTGTGGTGGGTCAAAAATGAGAGGGAAGAGAGAGAGACACACAGGCACACAGACACATAGACAGACACACAGAGAATATGTAGAGGGAGGGACAGGCATTACAGCCAAGGTATATGTTTCTAGGGGATGTCCCCAGTGACCTATTTTATTCAACCAGGCCCCATTACCCAATGATTATTCTATATTATCAAACAATTAATCTATAAATCTGCTCAAAGCTCTCAGCATACAGTCACAGGATTGGATTTATGAGTTGGCCTCCACGTCTTTAATAATGACATTATTAGTATATGTTTCAAATCTAACCCATAATACTATGTCTCTGCAAGAGGGTAACAGCATTTGACTCCGTGAACTGGATAGGTAGAAATAGCTATGTAGTCATGTTCCTTGCTCTAGATGTCTGAATTCATCAGAGAGATTCAACACCCCTCCAGCAAACTCAAAGATCTTTGGGAAAAAACCCAAGGTGGGGGCTAGGAATTCCTTTGCATCCAGAGTCCATGGACACAGATACAAGTGGCCTATTTCTCACCATTGTCTGCCAGTCAGTGAGAGCAAGAGTTTACTGGCTTAACCAATGAACTCCAGGTTCAGTGAAAGATCCCATTTCAAAACACATATCTGTGTTATCCCCAACTACTGATGAACATTATGTCACACACACATACTCACACTCATACATATACTCACACACACTCACATACACTATCACACACACACTCATATTCACACATTCACACACATATATTCACACACACAGAGTGTGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCTAGGCTTCAACGAGCGAGCCAGGGCCAGGCTAACTTTTATTGGGTTCCTTAAGCATTTCTCCCCATGCCAGGCAGGTGTGCAGTGTGTTCTGGGGTTCATCCACGTTTCCCCTCTTTCTTGACAG
Seq C2 exon
TAAACTATACTTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAATTATCCTAATAATGCCAGATGTCTGTGGAACATCGAGGTCCCAAACAACTACCGTGTGACTGTGGTCTTCAGAGATTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-Dmbt1:NM_007769:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(43.0=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: