HsaINT0049209 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52432048-52433217:+
Coord C1 exon
chr3:52432048-52432178
Coord A exon
chr3:52432179-52432865
Coord C2 exon
chr3:52432866-52433217
Length
687 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATC
5' ss Score
5.91
3' ss Seq
TCTTGCCACTGGCCTCACAGGTA
3' ss Score
8.32
Exon sequences
Seq C1 exon
ATAGTGGAGGACGTCACCCAAAACATTCTGCTCAAGGTGCCTGAGCCTATCAACTTGCAATGGGTGATGGCCAAGTACCCAGTGCTGTATGAGGAATCAATGAACACAGTACTAGTACAAGAGGTCATTAG
Seq A exon
GTAATCACCCCGCCATACCCCTGCCCCGAGTCAGCGGCCACTGGACTGTAGAGAAATGACAACAGGGGTTACTATGGGCCAGGTGCCATGCCAAGTGCTACACATCCTCTAACTCAGCTATTTTTTGTTGTTGTTGTTGACACGGAGTCTCTCTCTGTTGCCATGCTGGAGTGCAGCGGTATGATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCTGAATAGCTGGGACTATAGGCGCACACCACCTAATTAGCGCGCCCAGCTAATTTTTGTATTTTTAATAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCAACTCAGCCATATTTTTATTATTCACATTTTGTAGACGAGTAAACTGTGACCCCAAAATGTTCCGTAAGCTATCCAAGTCCAACTTCACACATGTGCTAAGGGCCAGAGCTGGGATTTGTACCCAGGCCACCTGACCCAGCTCTCTGCTCTTAGCCTCTATGTTTTGCCATTGTTTTTCACTCTGTGGCCTTGAGCTGCGGAGCATAGCTACTGCCACGTGACCCCAGCCCACTACCTATTCTCTTGCCACTGGCCTCACAG
Seq C2 exon
GTACAATCGGCTGCTGCAGGTGATCACACAGACACTGCAAGACCTACTCAAGGCACTCAAGGGGCTGGTAGTGATGTCCTCTCAGCTGGAGCTGATGGCTGCCAGCCTGTACAACAATACTGTGCCTGAGCTCTGGAGTGCCAAGGCCTACCCATCGCTCAAGCCTCTGTCATCATGGGTCATGGACCTGCTGCAACGCCTGGACTTTCTGCAGGCCTGGATCCAAGATGGCATCCCAGCTGTCTTCTGGATCAGTGGATTCTTCTTCCCCCAGGCTTTCTTAACAGGCACTCTGCAGAATTTTGCCCGCAAATTTGTCATCTCCATTGACACCATCTCCTTTGATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:75
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCCTGAGCCTATCAACT
R:
GAAGACAGCTGGGATGCCATC
Band lengths:
344-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)