RnoINT0048632 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7347088-7347928:-
Coord C1 exon
chr16:7347798-7347928
Coord A exon
chr16:7347440-7347797
Coord C2 exon
chr16:7347088-7347439
Length
358 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
GCTTGCTCCTGACCTCACAGGTA
3' ss Score
8.84
Exon sequences
Seq C1 exon
TTAGTGGAAGACGTGGCTGAGGACATCCTGGTCCAGGTGCCCAAACCTGTTGACCTGGAGGAGGTGGTAAACAAGTACCCTGTACTGTATGAGGAGTCAATGAACACGGTGCTGGTGCAAGAGGTCATTAG
Seq A exon
GTAATGTCCTGCCACGCCTAGGCAGACCCAGTCAGGCCTGGGCCACTGCTGGAGAGACAGCAGGTGTTACTATTAGCCAGCTGTTGGGCTAAGTACTAAACATCTGTCCTCAACTGTGGCTGCCGATTCTCGTTCTATAGATGGATAAACTGAGCCCCCCCCCGCCCCCCCCCCCGCCGCCCAAGAATGTTTAAGCCACATATTTGCTAAGGGCCAGGGCTGGTATTGTACCCAGTATGCCTCACCCAGTTCTGCACCTAAGCTTCTGTGTTCTATCGTGGTCTGTGGCCTCAGATGGAGAGGCACAGATACTGCCATAGAACCCCAGCCCACTAACAGCTTGCTCCTGACCTCACAG
Seq C2 exon
GTACAACAAGCTCCTAATGGTGATCACACAGACACTCAGTGACATGCTCAAGGCAATAAAGGGGCTAGTGGTAATGTCCCTGGAGCTAGAGCTGATGTCCACCAGCCTGTACAACAACGCTGTGCCTGAGCTCTGGAAAAGCAAGGCCTACCCGTCGCTCAAGCCACTGGCTTCCTGGATCATGGACCTGCTGCAGCGCCTGAATTTCCTGCATTCCTGGATCAAAAATGGCATCCCATCTGTCTTCTGGATCAGTGGCTTCTTCTTCCCTCAGGCTTTCCTGACAGGCACTCTACAAAACTTTGCCCGAAAGTTCGTCATCTCTATCGACACTATCACCTTTGATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:76
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGAAGACGTGGCTGAGG
R:
GAATGCAGGAAATTCAGGCGC
Band lengths:
346-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]