HsaINT0049385 @ hg19
Intron Retention
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57440502-57443730:-
Coord C1 exon
chr3:57443448-57443730
Coord A exon
chr3:57440622-57443447
Coord C2 exon
chr3:57440502-57440621
Length
2826 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
3' ss Seq
AATTTATTTTAATTGTTCAGGCT
3' ss Score
5.77
Exon sequences
Seq C1 exon
TTTTTTCTTCTTATCTAATGATGAAATGTTAGAGATTTTATCAGAGACCAAAGATCCACTTAGAGTTCAGCCACATTTAAAAAAATGCTTTGAGGGCATTGCTAAATTAGAGTTCCTTCCCAATTTGGACATTAAAGCCATGTATAGCTCTGAGGGCGAGCGAGTGGAGCTGATTGCACTCATTTCCACGTCTGCAGCGCGGGGTGCTGTGGAAAAGTGGCTCATTCAAGTGGAAGACCTAATGCTCCGGAGTGTTCACGATGTGATCGCTGCAGCCAGGCTG
Seq A exon
GTGTGTTTCCTAGGATTTGATATATACCCTATATTCTGCAAATGCTTTGTTTAAGAGGTTTTGGAAACCAGTAAATTAACACTTAAAGTTCTTACTATTTTAAATCATTTATTTTCTTTACTTCTTTGTTTCTAACATTATTAATATAACAATATTGCTATGAATTGATAATAGTATATGATTGTTATAAAAGAGAAAAGGTATTATGAGAGAGAAAAATAAGAGGTATATAATTTAGAATGGGGGAAGGTCCAGTGATAGGCTATTGGAGAAGGTGATGTTGAAACTGAGACACAAAGGACAGGTAGGAATAAGCCAGGTAAAGAGCAAGTGAGAGAGCATCTAGGTATCCTACGTAAAGCCCCTGGAATCAGAGAGAACTGGGGATTTGGGAGATCCTGAAAGAAGACAAATATGTCTGGAGTAGAGTAAGCAAAGTGGAGAGTAAAGTGACATGAGGTTGGAAAGGAAGGCAGTTAGGAGTTTGCATTTTATTTTAAATGCAATGGAACACCATCTAAATATTTTAATCAGGGAAGGGACATAGTCTGATTTATATTTTTATACCACTATGGCTATGGTATAAATAATAGATTAGTGGAGGTGTGAAAACAGGAAGACAAATTAGGAGACTCAGATTAGTTCAGATGAAAGATGATTTGGGCTGGTTTGCCAGAGATTCAGTTTCAAAAAATAAAAATAAAAACCAAAAATAAAGGAAAAAAGATGTGGTCTGTCACTAGGCAAATGGCAGAAGATAGGGAGAAAAGTAGAATATCAGAAATAAATTTTGTAGTTAATTTCAACAGGTCTTGATGATGAATTTGTTGTAGAGTACAAGGGTAAGGAGGGGGAGTTCTCAAAAATCACTTTTAGGCTTCTAATTTGAGCATATGGGTGGCATTTACTCTGGGTGATTCCTGGAGGAGAAGCAGATTTGTGGAGGCTTAGGGGAATATCAAGAGCTCAATTTTAGATATATTAAAATTGAAATGCTATGAGCTAGGCTAGTGGATATGTTTCATAGGCAAACAATCCTGCACATTAGCACATGTGGATCTGTAGGACAGTTCTCTTCAGACACGAGTGGTAAATGCATGACCTAGTTCACTTACTGCTTTTTACACTTAAACAACTACTTAAAAACTCAAATGAGATGAACAAACATTAAAGGGGGATATGTCATAAATTTGAAAGAAGGATAACACTTGGCACTACATGTATCTCACTTATGTTAATCCAATTAACCTAATCTTGAATGATAAACACGTATATTTCTGCCTTTAGGACCACAAATGAGCAGTTGTAAAGTAGTAGAATAGTTTTAAAAGGCATCGAAGCTTTATATTCAGCAACTCACTATATGTGAGTGAGTGTTCTTTTTCTTTGACCGAGAGCCCTATGGAGCTCATCTTCTTGTGGTGGCTATTCTGTTCAGCTTCAGTGTTCCTACAAATAAATCTTGACTTTTTCTCTCCTTTTACTATTTATGATTCAAAGCAAACTAAAACACATAGGAAAGAGCCACCATTGTCCATGAAAGTATTTCTTTAATCAGTATAGAAATTGACCTTCTATGTACCTAGCAATAGCTCTCAGTCACCATTCATCCTTCTTTGAAGCTTAGGTTAGCTTATCGTTTGCATTTGTTTCTAAATATGGCTAAGAAGCATTTTATAATAATACTGATATCCTATTTTAACTTTCTTATATCTAAGATGATGTTATTTTATTGAAAATATAATTTGCATTAGCATCAGCTTCAAAATTCATTCTGTAGTTGTTTTCAATTTATAGTTTGGATCTGCTAAAATCACTTACTGTTGAAAAAGCTATTTTTAAAAAGATTAAACCTCTCCCTCCATAAATCCATTTAAATGCATTTTGAATATCAAAGTGTTAGAAAAAATGAAAGTATACCTTGAATTCAAAACTATAGATGGTTCAATTATGCATAATTGAACAAATATATAATTGTAAAATTGTATACCCTGGTCATATAGGTTTTCAGAAAAGCTATGGATAAATAATACAAGGGCGCTATTAGTGCAGTTTTTAACTATATTGTATAATCTCCTTTTCAATTAAATCTTGGCATCAATATACATAATCTATTTGACTAGTTTTGTTGTTGTTGTTGTTGTTGTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTGAAGCAATTCTCCTGCCTCAGCCTCTTTAGTAACTGGGATTTCAGGTGCCCACCACCATGCCCAGCTATTTTTTTTTTTTTATTTTTAGTAGAGATGGGGGTTTCACCACATTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCATTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTCAGTCACCACCCTGGCCTTGACTAGTTTTTTCTAAGTTTACTAAAATTTTTATATTTTATTATGATAGAAGTAATAGGTATTCTATATAGAAAACTTGACAACTCTCCACAGCAAAGGAACATAAAAATCACACAGAAATCAACTTCCAGAAGAATCAACAGTTAAATCTACCCATTATTAACATGTTGGTGTTTATCTTTCCATTCTTTTATAAATAAATATTTCAAAAACATAATAATAATTTATAAAATTTGGAGGGAGTCTTTTAGTCATTTAACATTTTTTATGACTATATGACATTCTAGCCTATGTATGTGCCAAATATTACATTTCTCTATTGTTAGACATTTAGCTATTTTTTCTCATTCAAGCTTTTAAAGTTAGAAATTTATTTTAATTGTTCAG
Seq C2 exon
GCTTATCCAGAATCTGCAAGAAGAGACTGGGTTCGAGAGTGGCCTGGCCAAGTTGTACTTTGTATTTCTCAAATGTTCTGGACATCTGAGACACAGGAAGTGATAAGTGGCGGGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-DNAH12:NM_178504:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(22.4=100)
A:
NA
C2:
PF083938=DHC_N2=PD(0.5=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)