DreINT0058049 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19619047-19619534:-
Coord C1 exon
chr23:19619240-19619534
Coord A exon
chr23:19619167-19619239
Coord C2 exon
chr23:19619047-19619166
Length
73 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CTCTGATGTAATGTATTCAGGCT
3' ss Score
4.92
Exon sequences
Seq C1 exon
TTTTTCACACAGATTCTTTTTCCTATCAAATGACGAGATGCTGGAGATTCTCTCAGAAACCAAAGATCCCACGCGAGTGCAGCCACACTTGAAGAAATGCTTTGAGGGCATTGCCAAACTGGACTTCCTGCCCAATCTGGACATCCAAGCCATGTACAGCAGCGAGGGTGAGCGTGTGGAGTTCATCCAGCTCATCTCAACTTCTGAAGCACGAGGAGCTGTGGAGAAGTGGCTGGTGCAGGTGGAGGACATAATGCTGAGAAGCATCAGAGATGTGATCAATCGCTCCAGGCTG
Seq A exon
GTAAGCCTTTGCACAAATTGATGTTTTTACCATATTTCATTCAATTTTTTTTACTCTGATGTAATGTATTCAG
Seq C2 exon
GCTTATCCGGAGACTAAAAGGAGTCAGTGGGTACGTGAGTGGCCTGGGCAGGTGGTCCTCTGTGCTTCTCAGATGTACTGGACGGTGGAGGTGCATGAGGCCATCAGAAGTAGTGCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(21.3=100)
A:
NA
C2:
PF083938=DHC_N2=PD(0.5=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCGTGTGGAGTTCATC
R:
CTCACGTACCCACTGACTCCT
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]