RnoINT0048733 @ rn6
Intron Retention
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2430933-2434570:+
Coord C1 exon
chr16:2430933-2431215
Coord A exon
chr16:2431216-2434450
Coord C2 exon
chr16:2434451-2434570
Length
3235 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGC
5' ss Score
8.06
3' ss Seq
AATTTATTTTAATTATTCAGGCT
3' ss Score
5.81
Exon sequences
Seq C1 exon
CTTTTTCTTTTTATCTAATGATGAAATGCTAGAGATTTTGTCAGAGACCAAAGATCCACTCAGAGTTCAGCCACACTTAAAAAAATGCTTTGAGGGCATCGCTAAGTTGGAGTTCCTGACTAATCTGGATATTAAAGCCATGTACAGCTCTGAGGGTGAACGAGTGGAGCTGATTTCAGTGATTTCCACGTCTGCAGCGAGGGGTGCCGTAGAGAAATGGCTCATTCAAGTAGAAGACCTAATGCTCAGAAGTATCCATGATGTGATTGCTGCATCTAGACTG
Seq A exon
GTACGCTTCCTAGGATTAAATGGATGATCTGTAGTCTACAGATGCTGCCATTTGTTCATTTGGTGAACATTATTTTCCTCTGTGTTTCTAACATTACAAGTAAGAATTGACGAGACAGTATACTTCATAACACATACAACAGTATGTTATAAAAGGAAAATGTATTAGCAGAGAGAAGTAAAGTATATCTGTTTAGAATGGGGGAGGGCAGGGATAGGCTTACAAAGGAAGTTAGCCCGAGTTTGAGATATGAAAGAAAAGAGAAAATAGCTTAATAAAGAGTAGACATATCGGTATCCCGTGTAAAGGCCCTAAACACAAAAATGGTTTCATGAGAAACCATCAGAAGACTTCTGTGTGCGGAACAGAAGAGTGAGTGTAACGGAGAATGAAGATCGAGGGAGGAAGGAAGGAAGATGCACAGGGGGTCATTTTGTTTACACATGAAGGTCAGGAGTGTTTCTGTCAGGAGAAAGCCATACTCTGGTTTATATTTTTATACCACTTGGACTATGGTATAAAGAACGGATTAGTAGACTATCAGAACAGGAAGACAAATTAGGAGAGCCTAGAAGATAGATGGTGCCGGCTGACACTAAACAAGTGGTGGAGGCATGGAGGGAATTAGACACTATTAGAGAAATCTACTTGTATCCAATTTTAACAGGTCTTAAATCGATTGTACAGTAAAAGGGGGAGGAGGTCTCAAGAATTACTTTAATATTTTTGACAGGAGTGTATAGGGGAGATTTATTCTGAGGGAATGCTGAGAAGTAGGTCTGTGGACGCTTGTGAAAGATCAGAATTTTATTTTATAAATGTCAAAACTGAAATGTACCAGACACATCAGCTCACAGCTACAGTGTCAGCACTGGAGAAGCTGAGGATGGTGTGCAGCTCAGAGTTAGAGGCCAACCTGCTTTCCACAGTTGCATTTCAGGCTACAAAGTAACTCTATCTCACAACAACACAAAGTAACTACAACACAACTACTACAAAGTAACTCTATCTCACAACAACACAAAGTAACTACAACACAACAACTACAAAGTAACTCTATCTCACAACAACACAAACAAACAAAACCACAGGACTGGCTGACCAGGTGATGGGTCTTGCTGGGGCCTGATGGTCTGACTTGTGTTCCTGAAATCCACAGGATGGAAAAGGGGAGCTGATTCCCATGTGTTGCCTATTGATCTTCACACCTGCACTTTGGCATTTATCCCCGCCCCCACCATAGTGAGTCAAACCCTTTCAAAACACAGCAAATAGAATCCTGCAGTGTTACTTACACATTTCTAGTAGGCAGACAGCCATGTGCTTTAATATTTGCTGATCAGACCCTCTCAAACATGGTGTTAAATAAATTATTCAGTCCATTGTTGCTTTTGAGGCTTAACGACTTAAAACTCTAAATGAGATGAACACTCATGAGATGAACATTACGAATTGAAGGAAATATAGCACCTGGATACTTTTATGTACCTCACTTAACGCTAATCAAAATATTCTAATCTTGAAATGCATGCATTACTTCGTTCTGCTTTTAACACCACAAAGGAGCAGTTGTGCCGTGGGAGTAGTTTTGAAAGCCCTTGCTACCTAATTCCAGGAAGTCACCGCAAGAGTGAGGCAGCTTTCTCTTAAAGGGCCCTGTGAAGCGTCTCTTTCAAAATTATCATTATTTTAATTATGTGTAGTATTTATGTGTCTCCGTGTGAGAGTATGTGCACATCAGTGCAAGTGCCCACGGAGGCCAGAGACATCACATCCCTTTGGACCTGGAGACGCTGCCAGGTGCGAACTGCCAGACATGGGTGCTGGGAACTGGACGCTGGTCATTTGGAGGAGTGTTTACACTTCGTAACCTCTCTAGCCCAGGGCTCATTTTCTTGACTGGCTCTTCTGCAGCATCATTGCTTTTTTACAATTGAATCTTATTTCTTCTCCTTTCTCTGTGATTCCAAACAAACTAAAAACATGTAGGAAAGCATCAACATTACCTACGATGGAATGCCTTCATTGGCAGAGAAGTGTACCAGCACACATCTGGCAATCACTACTTTTACTTATCGCTTACATTGCTTTGTTATTTGAATGTAGCTATAAGTATCTCAATAAGAAACATCTCATAAATAATATCTCTATATTATGTTTAATGTATTTTTAATGAATATTTTTCATTAGCATCACCTTGAAAATATATTCTATAAAGTTTTTTAATTTATAATTTGTATTTGCTGTCCCCACTTTGTTATCAAAGCAAGCTACTTTTAAACTATCAAATCTTCCTTCCAAAATACATTTAAAGCTTTGAAACATGAAAGTATTAGGAATAGAAAGAAGCATATTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCGAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAGCATATTTCAAATTCAAATGTACAGATTGTTACGGTGCATATCATTTAATAAGTGTAATTGTATATCCTGGTTACATGAGTTTTTGGAAAAGTTATAGATAAGTGACATAAACCTTCTACCTACTAGCCCAGTTTTTTTTTTTAACATACTATGTGGTCTTTGTCTTAGTTGCTATGTTGCTATGATAAAAATAACCTCATCTAAACGACTTAAGGAAGTGTCTATTTTAGCTCACAATTCAAGGTGTAGTCCATTGTGACAAGGGAGTCCAGACAGCAGGAGCCAAGAGCAGCTGCCACACTACAGCCATAGCAAGGAGGAAGAGAGTCATGAGTGCTTGCTAGTGATTAGCTTTCTTTCTGTATACACATCAGAGTCATCTGCCCAGTGAATAGTCCCACCCACAGCTAAGATGGGTTGTAATCAAGTTATACCCCATAGTTACACCAGAGGCCTGTCTCCCTGGTGATTCTAGTTGACAACATTAACCAGCAATTTTCCTTTTTAATTATAATTTGACATCAATATGTATTTTTGATTTGTTTTCAAGCCTTTGTACATTCATAAACTATACTTAAACATAAACCCATCTCATAACTTTCACCCTCTTTATGTATGACTTTTCAAATGGTTTAGTGAAACTTTATATGTTCTTTATAATAGAAATAATTTGTATTGTTCACCAAAAACTGGACAACTAACCCAGCAAAAGAATTTAAAATTTGTTAGATGTTTTCAGCTCCCCTTCCTCTTGTAACCTTTTAAAACAGAAATTTATTTTAATTATTCAG
Seq C2 exon
GCTTACCCAGAATCTGCAAGGAAAGACTGGGTCAGAGAGTGGCCTGGCCAGGTTGTTCTTTGTGTGTCTCAGATGTTCTGGACTTCTGAGACACAGGAAGTCATAAGTGGTGGAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865:ENSRNOT00000079215:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(21.3=100)
A:
NA
C2:
PF083938=DHC_N2=PD(0.5=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]