HsaINT0049415 @ hg19
Intron Retention
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57494867-57496706:-
Coord C1 exon
chr3:57496517-57496706
Coord A exon
chr3:57494940-57496516
Coord C2 exon
chr3:57494867-57494939
Length
1577 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AATATATCCATGTATTTTAGTGC
3' ss Score
6.32
Exon sequences
Seq C1 exon
TTCAACTATATTTATATGAAGCAATGTGTAGAAAGTAGTCCTTTAGTACCTATTCAGCAGGAATGGCTGGATCACATGTTAAGGCTGATACCTGAGTCTTTAAAGGAAGGGAAAGAAAGAGAAGAACTTCTTGAAAGTCTCATAAATGAGGTGTCAAGTGACTTTGAAAACAGCATGAAGAGATATTTGG
Seq A exon
GTAAGTAGCATCTAACACACACCAGGCTTCTTTCACCTTGGCCTCCCCCCGTCCCCACTGAATCAAAAATAGAAATAAGCAAAATGAGTAATGAACACTATGTATTTAAACTATATCTGGTTTTTTTCTTCTTTTCTTTTTATTTTTTTTCTTCGAGACATGATCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCTATTTCGGCTCACTGCAGCCTCCGCCTGCTGAGTTGAAGCGATTCCCCTACCTCAGCCTCCCGAGTACCTGGAACTTCAGGCACACACCACTATGCCCAGCTAATTTTTTTATTTTTTGGTAGAGATGTAGTTTCACCATGTTGACCAAGCTGGTCTAAAACTCCTGGGCTCAAGCCATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACACGCTGAGCCACTCAGCCCAGCCTTAACTATATGTATTTCTTAGATACGATTTTTATTTAAAGTTTTTATTTTGAGTCTATACTTAAGTCAAAATCCTTACAATTTAAGGGTACTTTTTGTATTTTTTTTATTAGCTAACTTCTCTTTGATTTTTTACTTTGTCTTTATGATTTTAGCTATACTATTTATAGGTTTGCTAGAAAATACTAATATGTTTTGGGAGATTTATTAGGGGTATAATCTTTGCTATTTTTTAGAATAAACTTTTTTCCTTTTTAAAAATTGACAAATAAAAATTGTATATAATTATCATGTACAATACGTTTTGAAATATGTGTGGAATAGCTAAATTGAGCTAATTAACTGATGCATTTTTTTCACATATTTATCATTTTTTGTGTGTGGTGGGAACATAAAATCTACTCTTGACAATTTTCAAGGGTACAATAAATTGTTACTAACTAGTCACTATGTTGTATAATTGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGATGGAGTCTCACTCTGTCGCCCAGAATAGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCTAGCCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCTCCTTGGCTTCTCAAAGTGCTGGAATTACAGGCATGAGCCACCGCGCTCGGCCTCCATGTCGCGTAATCTCTTGAACTTGTTCCCTCCTATCTAACTGAAATTTTGTAGCCTGTGACCAACATCCTCCCAGCCCCTGGTAGCCACCATGAAATGCATTTTTTTAAGTGGCCATGCTAGTGACTTTTGAGTAGATGGAATGTGAAAAACTGAGATCTTATTAAAGCTTTTCGTTATCTGAACTCTCAAGTAAGGCCAAAATACTACCAAGAACTTGATTTTGTTTCAAATAAAGGAGTTTTTTCTTACATTCCTTTTAATGCACAGTAAACTATACCATCCAAAATCAAAAGTTAGAAACTTTGATATTAATAGATTGTGCAGAGATTTTCAAGAAGCATTAATATATCCATGTATTTTAG
Seq C2 exon
TGCAGAGCGTTCTTGTGAAACCACCAGTTAAATCGCTTGAAGATGAAGGAGGTCCTTTACCTGAATCTCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-DNAH12:NM_178504:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAATGTGTAGAAAGTAGTCCT
R:
ACAGGAGATTCAGGTAAAGGAC
Band lengths:
247-1824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)