DreINT0058041 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19628568-19630094:-
Coord C1 exon
chr23:19629905-19630094
Coord A exon
chr23:19628719-19629904
Coord C2 exon
chr23:19628568-19628718
Length
1186 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTGCTTTAGCAGAATTCTAGACT
3' ss Score
-6.27
Exon sequences
Seq C1 exon
ATGAATTACTTATTTATGAAAGAATGTGTAGAGCAAAGTCCTGTGGCTCCCTTTCAGCAACAGTGGCTGGATGCCATGTTGGGCCGTGTGTCCCTTCAGCTTCGCCAGGGGCCCGGCAGAAATGAGTTACTTGAAGACATATGCAAGGAAGTCAGCGAGAGTTATCTCAAAGTCATGATCAAGTACAGAG
Seq A exon
GTGAGTTTAGACACTGCTTTGAAATATAGTCACAACAAAATTATTTATTTTATTATTATGTTGCCATATGCGCTTACGTATAACATATAACAACATATAGCCAGGGTTTTTTCTGGCCTGAACATGAGGAGGTGATATCCCGATCATGAAATATTTGCTACTTGAAACAACATTTTTCATGATTTTTATCATCTTATCAAGTATCAACTATTAAAAACATCTTATTTGAAAAAGATAACATTAAATGTAAGTAAATACATGAGCAGTGCTTGAGCATCACTTGGAGTCTGTCTGCCTGCCTAATTTTTGTCAAAAGTCAGAGGTGCACTCAAAAGAATTATCTGCTAAATTGTTGCAAACAATTTAGATGGGTTGAATTTATACAAACAAATTAATTTTAGTAATTTTCAACTTAATTTGTTTGTTTAAGTTTAGCCAAAATAAATTGTTTGCATCCTTTATAATTTAGTAAATCCAAGGAATCATGTTTTAATATATATTTTTTTTCTGTGTGGTACAAAATTTGATGGAATTAGTCAACTTGTAATTATCTATGCAGGAAACCCTGCACAACACTCTATAGGTAGACTATAAGGCTGTATTTGTGTATAAAAGAATGCAGATGTGGACAGGACTAAGCCGAAGGAAAATGAATGAATGATTGTTTCATACAAATCTGTAATTCCCAAATATAATACTGAAAACCATAACTGGCTATTATTCTTTCTCTAATGTCCTGTGTACACTGTATGTCTTTTCAAAATAGATACATACAGATATATAACTGCATGTACAACAAAATATATAATCAACTCATCTCTAAATTGTAAGGCAACTTGCTGCAGTCAATTTACTTGCTGACTCAATTTAAGTCGAATAAACTCAAAAATGTCCTGAATCCGGTTGCCTTGAAATTTTGAGTCAACTTTTTTTTCTTTATTACCGTGCTAATGTTGTTAATCTTTTTTCTAGTAAGCACTATACTGAAAAATCCACAGTCAGCTGACACAGCTTCTCAAGATTGGAAGGGATCTGCTGAGTAAGTGTGTAGATTCATACAAAAAAGGAAAATGTAAATATTCTAGCAACATTTAGCATAATAATTTGAAAAAGGCTGAACTATAATTGTGTATTTGGCAACCAGTGAAATACTTACAATCTTGCTTTTGCTTTAGCAGAATTCTAG
Seq C2 exon
ACTTCTCCTGTCCATGGCATGACAGCTTTGTGCAGAGTCGAAGAGAGATACAGAAGAATCTACACATACTGCATCCGGCCATGAAGAGTGTCCTTGATATTTGTTACAGCACATTCTCACACCTGCTCCTTATTGATCTGTCAGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAGAATGTGTAGAGCAAAGTCC
R:
CTGCAGTCTGACAGATCAATAAGGA
Band lengths:
326-1512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]