MmuINT1008778 @ mm10
Intron Retention
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26706022-26706921:+
Coord C1 exon
chr14:26706022-26706094
Coord A exon
chr14:26706095-26706762
Coord C2 exon
chr14:26706763-26706921
Length
668 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GTGATGCTTTGCTTTTTCAGAGG
3' ss Score
9.15
Exon sequences
Seq C1 exon
TACAGAGTGTTCTTGTGAAGCCTCCAGTTAAATGGCTTGAAGATGAAGGGGGCCCTTTGCCTGAATCTCCTGA
Seq A exon
GTGAGTAAACTATTTTTAAAAATGGTATAACATCTAGCTTTGGATACAATTTAAAAATGAACTGATCTTACATTCAAGTCTACAATCATGAAGCTCAAAGGTATTTTCTTTAAAAATCTCCAAAGATATTCTCCACATCAATCATCTAGTTCTACTTACATTAGGAGGAAAACCTATATGAAAAATACTTCAATGTAATCTAATGTATGTTATAAGGTATCTTACACCTGTAATCCTAGGACTCAGAAGTAGGAGAATCAGGAGTTCAAAGCCAACCTCAGCTATGCAGTGACTTAGATGAAACTTGATCTAATAATAATAATAAACTAAGAGGCAAAATCTAACTTACCCTTGAGTAATCTTTGATATATTCCAGACAGGTTTTCCATAAACATAAAACTGTTCTTACTTCTGTATTTTGGGTAGCTGATCTAGAGCAAAGGAAAAGTTATCAGAACACGCAAGCCACAAGTCTGTTTCAGCCACAAATGATCTCTCTCCTCTGAAGCTAATGTGCAGTTTCAAAACCGAGTGCTTACACTCAAAAGACTTTCATTCCTGACTGTAATTCCTTACCCCAAATCCCCAGTCCTTCACTGTAATAGTAATTTCTCAAAACTGTGGTACGCCATTTCAACCCTGTTTAATGTGATGCTTTGCTTTTTCAG
Seq C2 exon
AGGTCTAGATTATTCCAATCCTTGGCATTCTAACTTTGTGCAAGCAAGAAGTCAAATATTAGCTAATTTGCACATTGTTCATCCAACTATGAAAATGTTACTGGAGCTTGGTTATACAGCATTTGCTAAAATAATTCTGCTGGACTTAACAGGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879:ENSMUST00000022433:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGTGTTCTTGTGAAGCCT
R:
CTAATTCCTGTTAAGTCCAGCAGA
Band lengths:
231-899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types