HsaINT1011363 @ hg38
Intron Retention
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57508382-57509212:-
Coord C1 exon
chr3:57509140-57509212
Coord A exon
chr3:57508541-57509139
Coord C2 exon
chr3:57508382-57508540
Length
599 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
ATGGTGTTTTGCTTTTCCAGAGG
3' ss Score
8.83
Exon sequences
Seq C1 exon
TGCAGAGCGTTCTTGTGAAACCACCAGTTAAATCGCTTGAAGATGAAGGAGGTCCTTTACCTGAATCTCCTGT
Seq A exon
GTGAGTAAATTATTTTAAAAACAGTACTTCATCCAATTTTTGATATAGATAAAAAATAAACTGATCTTACCTTCAAGTATACAATTGTGATGCTCAAAGGTATTTTGAACACATCTAAAAAAAAAGTACTCTTGTTTTTACCTCAGAGGTATTCTCTCTACTATGCTCATTTAGTTCTGCATACATAACTGGGGAGATCTTTATGAATGCATAGCTTAACTTAGCCTTGAGTAAGCTTTGGGGTATGGCAGACAGATTTCTCCAGCGCTTTTCTTTAGTCCTAAAGACTGTGTTCTTTCATTTTTACCAGGATAACTGAGCCAAAGCACAGTGGAAGTTAGCAGAGCTCTCAGATCTGGCCCATCACTCTGCCTTACTCACAAATTATTTCTGTTCTCTCTGAAGATAATGCAGTTTTGAGTTCTTGATGTGTTTTTATTAAATGCATATATCTTAAGGTTCCCATTGCTGACCACAGCTCCCTCTTCTCAAGCCCCAGTTTTCTCACTTCAATACTAATTTCATGTTATAAGCATTATTTCCTAAAGTTTAGGGTGTATTATTTTCATCATGTTTGATATGGTGTTTTGCTTTTCCAG
Seq C2 exon
AGGCCTAGATTATTCTAATCCTTGGCATTCTAGCTATGTGCAGGCAAGAAATCAAATATTCTCTAATTTGCACATTATTCATCCAACTATGAAAATGTTACTGGACCTTGGTTATACAACATTTGCTGATACAGTTTTGTTGGACTTCACAGGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844:ENST00000613504:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCGTTCTTGTGAAAC
R:
AATTCCTGTGAAGTCCAACAAAACTG
Band lengths:
230-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains