HsaINT0049425 @ hg19
Intron Retention
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57494109-57494939:-
Coord C1 exon
chr3:57494867-57494939
Coord A exon
chr3:57494268-57494866
Coord C2 exon
chr3:57494109-57494267
Length
599 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
ATGGTGTTTTGCTTTTCCAGAGG
3' ss Score
8.83
Exon sequences
Seq C1 exon
TGCAGAGCGTTCTTGTGAAACCACCAGTTAAATCGCTTGAAGATGAAGGAGGTCCTTTACCTGAATCTCCTGT
Seq A exon
GTGAGTAAATTATTTTAAAAACAGTACTTCATCCAATTTTTGATATAGATAAAAAATAAACTGATCTTACCTTCAAGTATACAATTGTGATGCTCAAAGGTATTTTGAACACATCTAAAAAAAAAGTACTCTTGTTTTTACCTCAGAGGTATTCTCTCTACTATGCTCATTTAGTTCTGCATACATAACTGGGGAGATCTTTATGAATGCATAGCTTAACTTAGCCTTGAGTAAGCTTTGGGGTATGGCAGACAGATTTCTCCAGCGCTTTTCTTTAGTCCTAAAGACTGTGTTCTTTCATTTTTACCAGGATAACTGAGCCAAAGCACAGTGGAAGTTAGCAGAGCTCTCAGATCTGGCCCATCACTCTGCCTTACTCACAAATTATTTCTGTTCTCTCTGAAGATAATGCAGTTTTGAGTTCTTGATGTGTTTTTATTAAATGCATATATCTTAAGGTTCCCATTGCTGACCACAGCTCCCTCTTCTCAAGCCCCAGTTTTCTCACTTCAATACTAATTTCATGTTATAAGCATTATTTCCTAAAGTTTAGGGTGTATTATTTTCATCATGTTTGATATGGTGTTTTGCTTTTCCAG
Seq C2 exon
AGGCCTAGATTATTCTAATCCTTGGCATTCTAGCTATGTGCAGGCAAGAAATCAAATATTCTCTAATTTGCACATTATTCATCCAACTATGAAAATGTTACTGGACCTTGGTTATACAACATTTGCTGATACAGTTTTGTTGGACTTCACAGGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-DNAH12:NM_178504:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCGTTCTTGTGAAAC
R:
AATTCCTGTGAAGTCCAACAAAACTG
Band lengths:
230-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)