RnoINT0048784 @ rn6
Intron Retention
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2386398-2387344:+
Coord C1 exon
chr16:2386398-2386470
Coord A exon
chr16:2386471-2387185
Coord C2 exon
chr16:2387186-2387344
Length
715 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GTGGTGCTTTGCCTTTCCAGAGG
3' ss Score
8.87
Exon sequences
Seq C1 exon
TACAGAGTGTTCTTGTGAAACCTCCAGTTAAATGGCTTGAAGATGAATGGGGCCCTTTGCCTGAATCTCCTGA
Seq A exon
GTGAGTAAACTATTTTTAAAAATGGTATAACGTCTAGCTTTGGATACAATTTAAAAATCAACTGATCTTACATTCAAGTCTACAATCGTGAATTAAGGAAGATTAAGTAGATTAAGGAAGGCCAAGGAAATGGCTCAGTAGGTCAAGGATATTTAAAAAAAAAATCTCCAAAGACATTCTCCACATTCATCACCTAGTTCTGCTTACAGTAGTAGGAGGAGCTATGTGAAAAATACTTCAATGTAACCTAATATACATTGTGAGGTACCTTACACCTGTAATCCTATAGCTCAGATATGGAGGCAGGAGAATCAGGAGTTCAAAGCCAACCTCGGCTATGCAGGGACTTACATGAAACTTGATCTAATAATAATAATAAAGCAAGAAGCAAATCTAACTTACCTTTGAGTAATCTTTGATGTATGCTGGACAGATTTTTCCATAAACCTAAAATGTTCTTACTTTTGTATTTTGAGTAGCCGATCTAAAGCAAAGTAAAAGTTAAGCCATGAGTCTGTGTCAGCCACAAATTATCTCTCTCCTCTGAAGATAATGCGCAGTTTCAAAATTCAATCATGCTTGAAAGATTATGACACTTCCTTTCCCGACCATAATTGCTTATTCCAAGCCCCCAGTTTTTCCCTGTAACATTAATTTCACAACTCATGTGGTATGTTATTTCAATCATGTCTGATGTGGTGCTTTGCCTTTCCAG
Seq C2 exon
AGGACTAGATTATTCCAATCCTTGGCATTCTAACTTTGTGCAGGCAAGAAGTCAAATATTAGCTAATTTGCACATTGTTCATCCAACTATGAAACTATTACTGGAGCTTGGTTATACAACATTTTCTGACATAATTCTGCTGGACTTAACAGGAATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865:ENSRNOT00000079215:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGTGTTCTTGTGAAACCTCC
R:
CGAATTCCTGTTAAGTCCAGCAGA
Band lengths:
231-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]