RnoEX0028468 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2386398-2387774:+
Coord C1 exon
chr16:2386398-2386470
Coord A exon
chr16:2387186-2387344
Coord C2 exon
chr16:2387579-2387774
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGGTGCTTTGCCTTTCCAGAGG
3' ss Score
8.87
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
Exon sequences
Seq C1 exon
TACAGAGTGTTCTTGTGAAACCTCCAGTTAAATGGCTTGAAGATGAATGGGGCCCTTTGCCTGAATCTCCTGA
Seq A exon
AGGACTAGATTATTCCAATCCTTGGCATTCTAACTTTGTGCAGGCAAGAAGTCAAATATTAGCTAATTTGCACATTGTTCATCCAACTATGAAACTATTACTGGAGCTTGGTTATACAACATTTTCTGACATAATTCTGCTGGACTTAACAGGAATTCG
Seq C2 exon
AGATAGAGGCCCAATTGACTGCGAAGCACTGAGAAATGATCTGTCAATTCAAGCGAGAAAGGCAGAAGAGAGGATAATGAACACGTGGTATCCAAAGGTCATAAATCTCTTTACTAAGAAGGAGGCGCTAGAAGGCATCAAGCCTGAAAAAGTGGACTCCTTTTATAACTGTGTTTCAATACTTATGTCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTCTTGTGAAACCTCCAGT
R:
ACACAGTTATAAAAGGAGTCCACT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]