DreEX6079801 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19626883-19628932:-
Coord C1 exon
chr23:19628866-19628932
Coord A exon
chr23:19628568-19628726
Coord C2 exon
chr23:19626883-19627078
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTTTGCTTTAGCAGAAT
3' ss Score
6.98
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TAAGCACTATACTGAAAAATCCACAGTCAGCTGACACAGCTTCTCAAGATTGGAAGGGATCTGCTGA
Seq A exon
AATTCTAGACTTCTCCTGTCCATGGCATGACAGCTTTGTGCAGAGTCGAAGAGAGATACAGAAGAATCTACACATACTGCATCCGGCCATGAAGAGTGTCCTTGATATTTGTTACAGCACATTCTCACACCTGCTCCTTATTGATCTGTCAGACTGCAG
Seq C2 exon
GTCTACAGGGCCTGTGGACTGTGAGAGTCTGAAGAACAAAGTGGCTGTGGAATGTGAAAGAGTCGAGGAGAGACTGATGAAAGCCTGGTTCCCCAAGATCATTCATCTGCTCACCAGCAAAGACACTCTGCAGAAAGTCAAACCCAAAAAACTTGACTCCTTTTACAACTGCGCCTCAACACTTATATCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAAAATCCACAGTCAGCTGA
R:
TAAGTGTTGAGGCGCAGTTGT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]