MmuEX6040131 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27525508-27526808:+
Coord C1 exon
chr14:27525508-27525580
Coord A exon
chr14:27526249-27526407
Coord C2 exon
chr14:27526613-27526808
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGATGCTTTGCTTTTTCAGAGG
3' ss Score
9.15
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
TACAGAGTGTTCTTGTGAAGCCTCCAGTTAAATGGCTTGAAGATGAAGGGGGCCCTTTGCCTGAATCTCCTGA
Seq A exon
AGGTCTAGATTATTCCAATCCTTGGCATTCTAACTTTGTGCAAGCAAGAAGTCAAATATTAGCTAATTTGCACATTGTTCATCCAACTATGAAAATGTTACTGGAGCTTGGTTATACAGCATTTGCTAAAATAATTCTGCTGGACTTAACAGGAATTAG
Seq C2 exon
AGCTAGAGGCCCAATTGATTGTGAAGCGCTGAGAAATGATCTATCAATTCAAGCTAGAAAATCAGAAGAGAAGATAATGAACACATGGTATCCAAAGGTTATAAATCTCTTTACTAAGAAGGAGGCACTAGAAGGCATCAAGACTGAAAAATTGGATTCCTTTTATAACTGTGTTTCCATACTTATGTCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTGTGAAGCCTCCAGT
R:
GGAAACACAGTTATAAAAGGAATCCA
Band lengths:
245-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: