HsaEX6056756 @ hg38
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57507643-57509212:-
Coord C1 exon
chr3:57509140-57509212
Coord A exon
chr3:57508382-57508540
Coord C2 exon
chr3:57507643-57507838
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATGGTGTTTTGCTTTTCCAGAGG
3' ss Score
8.83
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
TGCAGAGCGTTCTTGTGAAACCACCAGTTAAATCGCTTGAAGATGAAGGAGGTCCTTTACCTGAATCTCCTGT
Seq A exon
AGGCCTAGATTATTCTAATCCTTGGCATTCTAGCTATGTGCAGGCAAGAAATCAAATATTCTCTAATTTGCACATTATTCATCCAACTATGAAAATGTTACTGGACCTTGGTTATACAACATTTGCTGATACAGTTTTGTTGGACTTCACAGGAATTAG
Seq C2 exon
AGCTAAAGGTCCAATTGACTGTGAATCACTGAAAACTGATCTATCAATACAAACTAGAAACGCAGAAGAGAAGATAATGAATACATGGTATCCAAAGGTTATAAATCTCTTTACCAAGAAGGAGGCACTAGAAGGTGTTAAACCTGAAAAATTGGATGCATTTTATAGCTGTGTTTCCACACTTATGTCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-'6-13,'6-11,7-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTCTTGTGAAACCACCA
R:
GGAAACACAGCTATAAAATGCATCCA
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains