HsaINT0049601 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7626946-7630610:+
Coord C1 exon
chr17:7626946-7627007
Coord A exon
chr17:7627008-7630439
Coord C2 exon
chr17:7630440-7630610
Length
3432 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
3' ss Seq
CCTCTGCTCTCCTTCTGTAGAAG
3' ss Score
10.02
Exon sequences
Seq C1 exon
AGCCACGGTTGGAGGGACCTCAAGCACAGAGTGAAGAATCAGTGGAGCCCGAGGCAGATGTG
Seq A exon
GTAGGCTTGGGTCTTCCCTGTGGCAGATATTCCTCCCCCAAAACTGGTGAATCAAAGGATCAGTTGTGGATGGCACATGAGGAATTCTCTCTTGTCTGCCACTTCTTCTACTTGCTCTCTGCTGTTAGCCTACTCACCACAAATCCAGTTCACTGAGTAAAAGACAAAGTCATCTGTGCCTTCGCCAGGACAGAGGAGGGCTTTAAGTAAGGCGCAGGTCTCTCTTGTCTCCCCACCTTGGGTCAAACTGTGATGAGCTTATTCATCATGCGGGTGAACACCTGAACAAGTTGAATGAGCTGGGAAGATATTGTCCTAATTGGATACTAATTTCTAAGACATGCTCTTTCCACCTTTCCTTCAGTTCTTTCCTTTGGCTGAAGAATTTACAGAAGCTGCTTCAGTCACTTTGAGAAATGGCACTAAATGACCTCTGCTTCTTTATTTCCAAGTTGCATCAAAGCCTAGTCATGACCATAGTTACCTGGGTGAGAAGAATAGAGTGATGACCTTGACATTTTTCAAAAAGGGAAAGAAAAGTAATAACTATCGAAGAAAAAAATGGCAAGAGACAGAAAAGTAAAATAGAGAAAATAAGACTCATGGTGTTACTGCCCAAACACATTTAATATTAATATTTGATATGTCTGGCCAGACACGGTGGCTCAAGCCTGTAATCCCGCACTTTAGGATGCCGAGGTGGGTGGATCACCTGAGGTCAGGATTTGAGACCAGCCTGGCCAACATAGTGAAACCCCATCTTTACTAAAAATACAAAAATTAGCAGGGTGTGGTGGCGGATGCCTGTAATCCCAGCTACTCGCCAGGCTGAGACAGGAGAATTGCTTGAACCCGAGGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTGTACTCCAGTCTGGGCAATAAGAGCAAAACTCTGTCTCAAAACAAACGAACAAACAAAACCCAAAAAAACAAAAAAACAATATTTTGATATATCTTTTACTTTTGTGCACAGGTTTGTAAGTTTGTTTGTTTTTGTATAATCCTAACTTTATCATATGTTACTTTTTTTTTTTTTTTCTGAGATGGAGTCTTGCTTCCGTCGAGCAGGCTGGAGTGCAGTGGCATGATCTTGGCTTACTGCAGTCTCCACCTCTGGGGTTCAAGTGATTCTCCCTCCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGGCGGGGTTTTGTCATATCGGCCAGGCTGGCCTCAAACTCCTGACTTCAGCTGATCCACCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTCAGCCACCGTGCCTAGCCCATATGTTATGATTTTGTATTAAACCTTTTCACAAAACATTTTATTTGTATTATTATTATTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTGGGCTCACTGCAATCTCCGCCTCCCAGGCTCAAGTGATTCTCATGTCTCGGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCATGCTGGGGTCATTTTTGTATTTTTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCTGGTGATCCGCCTACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCCTTCTTTGTTATTTTATTTGTATTTGACTTCAAGTGAATATATATATATATATTTTCTTTTTGAGACAGAGTCTTGCTCTGTTACCCAGGTTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGCTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCATGCCACCATGCCCGGCTGATTTTTGTATTTTTTTTAGTAGAGGCAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCCTGTGATTCGCCCCCACCCCCCACCCCCACTCCGGCCTCCTGAAATGTTGGGATTACAGGCATGAGCCACCACGCCTGGCCAATTTTTTTTTATATTTGCATTTTTAAAAATGACATATCTATGCAGGTCCTTTTGTCTATTTGTTTATTGAGTTTTTAGTGTTTTTCTTATTGGTTCATCCTGTCTATATGTATTATAGGAAAGATTTTAGATCACTATTAATTTTTCTTGACCTGGAAACTTTAAGAGAGATTCCTTCTTCCAGGAGGAAAGATGAAAAGACTTCGCAAGTTCACTGATCTGTATCTTCATATCTTCTGATTTCCTTTATTTATTTGTTTGTTTATTTATTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGGGCAGTGGTGCAATCTCGGGTCACTGCAACCTCTGCCTCCCGGGTTCAAGAAATTGTCCTACCTCAGCCTCCCAAGTAGCTGGGATTACAGGAACCCACCACCATGCCTGGCTGATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAATGCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGCGCTAGGATTACAGGCATGAGCCACCATACCCAGCTAATTTTTTTTTTTTTTGAGACAGATTCTCACTCTGTTACCCAGGCTGGAGTGCAGGGGTGTGATCTCGGCTCACTGCAATCTCTGACTCCTGGGTTCAAGCGATTCTCCTGCCGCAGCTTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGCTAATTTTGTATTTTTAGTAGAGACAAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCACTTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGATGTGAGCCACCGCGCCCAGCCCTCTTTGGTGTTTTTGTGTCTTTTTCCCTCCTCACTTTTTCCTTAATGTTGTACCAATTGACTTTTACCTAGTATTTTACACTTCTTTTGGACTCCATCGTGAAGAAATTGCTCCTATACCCTCTCCCTTTTCCAGCTTGTGGTCTCCCTGCTCCTAATTGCTTGATCTAGGCTAATATCCTACACATTCCCTTAATTCACCTTTACCTTTGAGATCGAGGGCTGACATTTTTAAAAACTACAGGCATAAAGATAATCTCTTGCATTGGGTGGATAATATCCCAGTTTTCCTCTGTGATCTGTTTGTTTGTTTGTTTGTTTGTTTTATTACTCTTAGAGGCAAGAAATCTTATTTTTCTGTTTCTTCCAAAGCTGGAAAGCTATCTTTCAGTTTCTCCTAACCATTCTGAACCTGTCTGGCTTCTCTCATCTCCCATGTCCTCACTTGTGATTGTGGATGGGAGGAATGACTCATCCTGGCAGTTGTAGTTACTTTGGCCCTCTGCTCTCCTTCTGTAG
Seq C2 exon
AAGCCCCTCTTCCTTTCCCGAGCTGCGCTGACAGGACTGGCGGATGCAGTGTGGACACAGGAGCATGATGCCATTCTGGAACACTTTGCCCAGGACCCTACAGAATCCATCCTCACCATCTTCATTGACCCTTGTTTTGGGCTGAAGCTAGAGCTGGGCATGCCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)