HsaINT0049631 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7696299-7697676:+
Coord C1 exon
chr17:7696299-7696523
Coord A exon
chr17:7696524-7697571
Coord C2 exon
chr17:7697572-7697676
Length
1048 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
3' ss Seq
TCCTTGTCGCTGCTCTCTAGGAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
ACCACATCCAATAACGTGCAGAGCATCATTGAGAGCAGGGTTGAGAAGCGAACCAAGGGTGTCTACGTGCCATTCGGGGGCAAAAGCATGATCACCTTTATGGATGACCTAAATATGCCCGCTAAGGACATGTTTGGGTCCCAGCCACCCCTGGAGCTGATCCGCCTCTGGATTGACTATGGCTTCTGGTATGACCGTACGAAGCAGACCATCAAGTACATTCGA
Seq A exon
GTAAGCCTCGCTAGAGTCTGTTCTTCAGGCCTCTGCTCCTTCTGGGATAGGCTCAGTCCCCACTCCACTGGGGCCCCAGGCTATGGTCCTGTCATCTTGGATTCCTTCCCACACAGGAGCGTCCTTCTCCATGACAGCAGTTCTCGGCTCCCCACTCACGAGCCAGGCATCCTCCCTCAGTCCTGGCTCCTTCGTGGGATTCTGAGCATATTGTTTGCCTGCTTGCTTTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTCTTTCTCTTTCTTTCTTTTTCTTTCTTCTCTTTCTTTCTCTTTCTTTCTTTCTTTTTTTCTTTCTTTCAGACAGCATCTTGCTATGTTGCCAAGGCTGGGGTGCCGGGTTAATTTTATGATTTTTAGTGGACACAAGGTCCCCATATGTTGGCCAGGCTGGTTTTGAACTCCTGGGCTCAAGAGATCCTCCCATCTTGGCCTCCCAAAGTGTTGGCATTACAGGCCTGAGCCATGCTCCCGGCTGCTTCTCTTTAATCAGCGGCCATCGCGGCCTGGCTCCTGGGGTTGTTTGTGTGTATATCTGGCACTCAGGGCCAAAAACTCGCCTAGTGCTATATTCATGTGTGTTTGAGAGAGAACATACACACACACGTGTATAGATAGGTACAATTTTAAAAGAAGAAAAAGAGAAAAAGAAGAAAGAGAAAGTCTAGAAGACACAAATGTTTTTTTACTTACCTGTATTTTCTCATTTGGGTACATGGATTATAAGGATGAAATACAGACAAATGCATTCCTGGTACTAAAATAAGTTTCCCATGTCCCTTCCTTCTCTTCCCCTCCCCCTGCCCTACCACTCCATGTTCCTCTCAACTCGCTGCATCCCGGTTCCTCTTCCCCTTTGTCCCTCCTCGCACTGTTTTCCTCCCACTCCTTTTCACCTGGCCTGTGTCGGCGCCTCTCTTGCCCTCTCCCCTCCTGCCTGTCTGCCCTCCTTGTCGCTGCTCTCTAG
Seq C2 exon
GAAATGTTCCTGATGGCTGCCATGGGCCCCCCTGGGGGTGGACGGACTGTCATCTCCCCAAGGCTACGGAGTCGCTTCAACATTATCAACATGACCTTCCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(27.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCAATAACGTGCAGAGCA
R:
TGTGGGGAAGGTCATGTTGAT
Band lengths:
327-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)