DreINT0009235 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21265216-21266276:+
Coord C1 exon
chr7:21265216-21265440
Coord A exon
chr7:21265441-21266171
Coord C2 exon
chr7:21266172-21266276
Length
731 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTTTGTCGTAATCTTAAAGGAC
3' ss Score
6.36
Exon sequences
Seq C1 exon
ACTAGCTCTAATAACGTGCAGGAGATCATTGAGTCTCGGGTGGAAAAGAGGATTAAAGGTGTCTACGTTCCAGTGGGAGGGAAAAAGATGGTGGTTTTCCTGGATGATCTCAACATGCCCGCCGTGGATAACTTCGGCTCCCAGCCACCTCTGGAGCTGCTCCGCCTCTGGATTGACTACGGCTTTTGGTATGACCGTCAGAAACAGACCCTCAAATACATCAAG
Seq A exon
GTAAGACTGTGTGTGTGTGTGTGTGGTAATGGGCATTCATTACCTTTTGGGGATCAAATATACCCTCAAACTTACCAATAGTGGTCATTTTTTACCTTGTGGGGAAGTTGTTTGGTCCTTATGAGGAAAACTGTTCATCAAAAATGTGATCAATCAAAATTTTTTTCAAAATTGACAAGAATGGGTGTAGTTCAATAGTTTTAGGACAACTTTGATAAAAGATGATGATCCACTTCAAATGTGGACTACTAAATATTGAAAATGTAAACCTGCAGAATGTTTTTTGTGATGATTGAGTTTTGGGGTAGAGTCAGAGAAAAAGGAGAGAATCTACTTTCTGTGCGGTAGAAAAGTCATTATATCTATAGTAAGTCCCAATAAAACTTACAAACCCAGTGTGTGTTGTTACTTATTTTAAAAAATATAAGCTTGGTAATATCAAACAATATCTTGACATATACTTTAACATTCATCATGTCATTATTATCTGACCTGCCAGTGTCAGTTGCTTCACAAATCTTTACTCTTGGCCTTATGGGATGTTAAATTGTCCATCTTATGCAGTTTTACACAGAAAAATACAGTAGTTGATCATCGGGTGCTGTCTTATGAGTAAATTTGCTTTGTTGTTTGCTTGTTTATTGTATTAAAATGTGCAATTTTGAATGCAGTGAAATTGTCCATATGCTAATAAAATTAGTTTTCTCACTCTCTTTGTCGTAATCTTAAAG
Seq C2 exon
GACCTTTTCCTACTGGGTTCGATGGGGCCCCCTGGTGGAGGGAGGACTCACATATCAGGACGCCTACAGAGCCGATTTAACCTGATCAACATGACTTTCCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(27.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGCTCTAATAACGTGCAGGA
R:
AGGGAAAGTCATGTTGATCAGGT
Band lengths:
327-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]