RnoINT0048902 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56066709-56067876:-
Coord C1 exon
chr10:56067652-56067876
Coord A exon
chr10:56066814-56067651
Coord C2 exon
chr10:56066709-56066813
Length
838 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
3' ss Seq
TCTTTGTCTCTGCTCTCCAGGAC
3' ss Score
10.59
Exon sequences
Seq C1 exon
ACCACATCGAACAACGTGCAGAGCATCATTGAGAGCAGAGTGGAGAAGCGAACCAAGGGTGTGTATGTGCCATTTGGGGGCAAAAGCATGATCACCTTTATGGATGACCTAAACATGCCTGCTAAGGATATGTTTGGGTCCCAGCCACCCCTGGAGCTGATACGCCTCTGGATTGACTATGGCTTCTGGTATGATCGTGTGAAGCAGACCATCAAGCACATTCGA
Seq A exon
GTAAGCGTCTGGAGACCTCGGTCTCACCTGTGGCAGGTGGGCTCAGTCCCTCCTCCACTGGACCCCTGGGCCACACAGTCTTATAATTGTATACTCCTCTCTCCACAAAAGTGCTCTGCTCCTTTCTGAGGACCCATATATCTATCTCCCAGGTTACTGACCCCATTGTTAACTCTCCTCACCGAGCCTGTCTGTACTTGGTGACTAGAGTCTTGCTCTTCATGTCACCTTGCTTCCAGACCTCCTCCCTGTGCACACGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTGTGGTCTCAGTCCTTCATCTGTGTGTCTGTTCTCCATTCCTACCACAGGTCAGACATCTTTCTCCATCTTCACTCTCTTCCTGTGGGATTATGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACCCTCCTCCTGATCACCCCCCAGGGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTGTTTTTTGGCTGTCCTGGAACTTATTTTGTAGATCAGGCTGATCTCTTGAACTCACAGAAATCCTCCTGTCTCTGCTTCTGGTCCTTGTTCAGGGATTCAAGGCATGCCCTACTGTGGCCAGCCAGCATGCTGTTTTAGCACATGCAGTATACTGTGTACTGATCAGATCAGGCTGACTCAAGTACCTCACACCTCCAGCTGTGCGCTTCTCCTGGAGACATTCAGAGTTCTCTGGCCCAGCTGTCGGGAGGCATCATTACTCCTTCTGTCTCTTACCATCCCACCGGTCTCCCCTCTTCTTTGTCTCTGCTCTCCAG
Seq C2 exon
GACATGTTCCTGATGGCTGCCATGGGGCCTCCAGGGGGTGGACGGACTGTTATCTCCCCGAGGCTGCAGAGTCGCTTCAACATCATCAACATGACCTTCCCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(27.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATCGAACAACGTGCAGA
R:
AGTGGGGAAGGTCATGTTGATG
Band lengths:
329-1167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]