HsaINT0049832 @ hg19
Intron Retention
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84851389-84851744:+
Coord C1 exon
chr2:84851389-84851514
Coord A exon
chr2:84851515-84851588
Coord C2 exon
chr2:84851589-84851744
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
AATATGTATATCACATATAGGTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
AGATTAAATGCCCTAGCTGCAATAGTTCAAGGCAGTCTTCCTAAATTACACAGAAACATCCTAACTGCATTGATTACTATTGATGTGCATGCAAGAGATATAGTCACTGAACTTGTTCAATCCAAG
Seq A exon
GTAACTGTTTCATTTAAGTAAAATTATATACTTCTTTCTGAAATTAGTGTATCTAATATGTATATCACATATAG
Seq C2 exon
GTGGAGACAGTTGAATCTTTTGACTGGCAGAGACAACTGCGCTATTACTGGGATATAGACCTGGATAATTGTGTGGCTAGAATGGCGCTCTCTCAGTACACTTATGGCTATGAATATTTGGGTGCATGCCCAAGATTGGTTATTACTCCACTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-DNAH6:NM_001370:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(7.4=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTAGCTGCAATAGTTCA
R:
TCCCAGTAATAGCGCAGTTGT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)