MmuINT0050988 @ mm10
Intron Retention
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73144010-73145026:-
Coord C1 exon
chr6:73144901-73145026
Coord A exon
chr6:73144172-73144900
Coord C2 exon
chr6:73144010-73144171
Length
729 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CAATTGACTGTTTTCTTCAGGAT
3' ss Score
7.93
Exon sequences
Seq C1 exon
AGATTAAATGCCCTGGCCGCAATAGTTCGAGGCAATCTTCCTAAATTACACAGAAACATCATCACTGCATTGATTACCATTGATGTGCACGCAAGAGATATAGTTTCTGAGCTGGTTCAAGCCAAG
Seq A exon
GTAAATGCTTCATTGAAGGAAAATGGCACAGCAAGACGCAAACCCCATATGTCTCACCCACCCATCATTTCTGTCACCGATGCAGGTCGACTCAGCCGACTCCTTCGACTGGCAGCGGCAACTGCGCTATTACTGGGACATGGACCTGGATAACTGCGTGGCTAGAATGGCGTTGTCCCAGTACACCTATGCCTATGAGTACTTGGGAGCGTGCCCGAGGCTGGTCATCACTCCTCTCACAGTACGTTACTGAGCACTGAGGTTTACTCACACTGGCCCAGGGCCATCATGAAAGTCTTCTCCGCCACCACATCTTTACATAGCAAAGACTTTCGTTGTTTGATTTGTGCGCCTGAGTCTGCGAGTATATTTCCACTAGAAATTTTCATGGCCAGGGAGATGTGTGGAAAGTGCTTGCCATGCAGGCATGAAGAGTTGGCTTCAGATCCGCAGAACCCATATAAGAAGCTGGGCCTGGAGGCCTGGGCTGCAATCACAATGATAAGGAAGCAGAAACAGGAAGATCCCTGTAGATCACAGGCCAGCCACTCTAACAAATCAATGAGAGACCCTGGCTTAAAAAGTAAGAGAAAGTGATTGAGAAAGGCACCTAATGTTGACCACTGACACACGCACACATACACTTCTAGCCAATAAATGAACCAGGCCTATGAACTTGTATTTAAAGCCAATTCTCTTCGATAAAAACCAATTGACTGTTTTCTTCAG
Seq C2 exon
GATCGCTGCTACCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCGGCTGGCACAGGGAAAACAGAGACCACCAAAGACCTAGCAAAAGCCCTCGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861:ENSMUST00000114040:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(4.9=26.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTAAATGCCCTGGCCGC
R:
TGTAGTCCAAACCGTCAGAGC
Band lengths:
286-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types