HsaINT1011530 @ hg38
Intron Retention
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84624265-84624620:+
Coord C1 exon
chr2:84624265-84624390
Coord A exon
chr2:84624391-84624464
Coord C2 exon
chr2:84624465-84624620
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
AATATGTATATCACATATAGGTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
AGATTAAATGCCCTAGCTGCAATAGTTCAAGGCAGTCTTCCTAAATTACACAGAAACATCCTAACTGCATTGATTACTATTGATGTGCATGCAAGAGATATAGTCACTGAACTTGTTCAATCCAAG
Seq A exon
GTAACTGTTTCATTTAAGTAAAATTATATACTTCTTTCTGAAATTAGTGTATCTAATATGTATATCACATATAG
Seq C2 exon
GTGGAGACAGTTGAATCTTTTGACTGGCAGAGACAACTGCGCTATTACTGGGATATAGACCTGGATAATTGTGTGGCTAGAATGGCGCTCTCTCAGTACACTTATGGCTATGAATATTTGGGTGCATGCCCAAGATTGGTTATTACTCCACTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423:ENST00000237449:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(13.2=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTAGCTGCAATAGTTCA
R:
TCCCAGTAATAGCGCAGTTGT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains