RnoINT0049022 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101081133-101081495:-
Coord C1 exon
chr4:101081370-101081495
Coord A exon
chr4:101081289-101081369
Coord C2 exon
chr4:101081133-101081288
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATCGTTTCTATCCGGTGTAGGTA
3' ss Score
7.96
Exon sequences
Seq C1 exon
AGATTAAATGCCCTGGCCGCAATAGTTCGAGGCAGTCTTCCTAAATTACACAGAAACATCATAACTGCATTGATCACCATTGATGTGCATGCAAGAGATATAGTTTCTGAATTGGTTCAATCCAAG
Seq A exon
GTAAATGTTTCACTGAAGGAAAATGGCATAGCAAGATGTGAAGCCCGTATTCTCACCATCCATCGTTTCTATCCGGTGTAG
Seq C2 exon
GTAGACTCAGCGGAGTCCTTTGACTGGCAGCGGCAGCTGCGCTACTACTGGGACGTAGACCTGGATAACTGTGTGGCTAGAATGGCGCTATCTCAGTACACCTATGCCTACGAGTACTTGGGAGCATGCCCGAGACTGGTCATCACTCCGCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(7.4=32.7)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATGCCCTGGCCGCAATAG
R:
TCTACGTCCCAGTAGTAGCGC
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]