Special

RnoINT0049022 @ rn6

Intron Retention

Gene
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101081133-101081495:-
Coord C1 exon
chr4:101081370-101081495
Coord A exon
chr4:101081289-101081369
Coord C2 exon
chr4:101081133-101081288
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATCGTTTCTATCCGGTGTAGGTA
3' ss Score
7.96
Exon sequences
Seq C1 exon
AGATTAAATGCCCTGGCCGCAATAGTTCGAGGCAGTCTTCCTAAATTACACAGAAACATCATAACTGCATTGATCACCATTGATGTGCATGCAAGAGATATAGTTTCTGAATTGGTTCAATCCAAG
Seq A exon
GTAAATGTTTCACTGAAGGAAAATGGCATAGCAAGATGTGAAGCCCGTATTCTCACCATCCATCGTTTCTATCCGGTGTAG
Seq C2 exon
GTAGACTCAGCGGAGTCCTTTGACTGGCAGCGGCAGCTGCGCTACTACTGGGACGTAGACCTGGATAACTGTGTGGCTAGAATGGCGCTATCTCAGTACACCTATGCCTACGAGTACTTGGGAGCATGCCCGAGACTGGTCATCACTCCGCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(7.4=32.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATGCCCTGGCCGCAATAG
R:
TCTACGTCCCAGTAGTAGCGC
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]