GgaINT0021579 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:8930325-8930827:-
Coord C1 exon
chr12:8930671-8930827
Coord A exon
chr12:8930498-8930670
Coord C2 exon
chr12:8930325-8930497
Length
173 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
TTTAATTATGTGTCTATCAGGTG
3' ss Score
8.41
Exon sequences
Seq C1 exon
GGCTTAAAGGATTATTATGATACACTTCAGCTTCAACTTAATGATATTGTAGAGCTGGTAAGAGGAAAACTGTCAAAGCAAACGAGGACAACACTGGGTGCCTTGGTTACTATTGATGTTCATGCTAGAGATGTCCTCATGGAAATGATTGAAAGTG
Seq A exon
GTACGTAATCTCATTTTGCTTAATACAACACAACAGTTTTAAGATGTATCAAGTGTGATTACTTAGATGTGAGCATAAACAATAATAATTCCAAAGTTTTATATTTCTATTTAGTAGAAAATTCAGTTATCTAAAACTTCCTTTATTGTTGCTTTTAATTATGTGTCTATCAG
Seq C2 exon
GTGTACAGAGTGAAACAGACTTTCAATGGCTTGCACAACTACGATATTATTGGGAGTTAGAGAACGTTCGTGTCTGCATCATTAATTGCAATGTAAAATATGCTTATGAATACCTTGGAAACTCACCACGCCTGGTCATTACTCCTCTAACAGACAGGTGTTATCGCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(10.4=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAACGAGGACAACACTGG
R:
GTGCGATAACACCTGTCTGTT
Band lengths:
250-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]