MmuINT1008756 @ mm10
Intron Retention
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26770361-26771069:+
Coord C1 exon
chr14:26770361-26770517
Coord A exon
chr14:26770518-26770896
Coord C2 exon
chr14:26770897-26771069
Length
379 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
TTTTATTTCATTCTTCCTAGGTG
3' ss Score
10.74
Exon sequences
Seq C1 exon
GGATTAAAGAAGTACTACAAGGAACTCCAGTATCAACTAAATGACATTGTGGAGCTGGTGAGAGGGAAGTTGTCTAAGCAGACCAGGATCACACTGGGGGCTTTGGTTACAATTGATGTCCACGCTAGAGATGTCGTCATGGACATGATTGAAATGG
Seq A exon
GTAGGTGACCGTTTCTTTACTACAAAATGTAAAATATTGATAGTGTCTAAGAAACCAAGACATGAGTTTTTTCTTAACAGGATTTCTTTTTGAATACTCTTTTGTTTTCTTTTTTGTTTGTTTGTTTTTGAGACAGGGTTTCTCTGAGTGGCCCTGGCTGTTCTGGAAGTAGCTATGTAGACTAGGCTACCCTCAAACTCGCAGGATCTGCCTGTCTCTGATGCCTCTGATTGCTGGGATTAAAGGCAAACACCACCTTCACCTGGTGAATGATCTTGTCTTTAATTTGAAAACATGAATCATTTTAATGTTTGCTGTGATAATAAGAAATTACTTTTCAAGTTATATTCACTTGATGATTTTATTTCATTCTTCCTAG
Seq C2 exon
GTGTCTCACATGATACAGATTTTCAGTGGCTCGCTCAACTTCGTTATTACTGGGAATATGAGAATGCTCGAGTTCGTATCATTAATTGCAACGTCAAATATGCTTATGAGTATCTTGGTAACTCACCTCGACTTGTCATAACGCCTTTAACTGACAGATGTTACAGAACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879:ENSMUST00000022433:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(10.4=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGTACTACAAGGAACTCCAGT
R:
TCTGTAACATCTGTCAGTTAAAGGCG
Band lengths:
318-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types