BtaINT0004515 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44255521-44256085:+
Coord C1 exon
chr22:44255521-44255677
Coord A exon
chr22:44255678-44255912
Coord C2 exon
chr22:44255913-44256085
Length
235 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TTTTACTTTATTCCTTCCAGGTG
3' ss Score
11.68
Exon sequences
Seq C1 exon
GGATTAAAGAAGTACTATAAGGAACTTCAGAATCAACTAAATGATATTGTGGAGCTGGTAAGAGGAAAACTATCAAAGCAGACCAGGATTACTCTGGGGGCTTTGGTTACTATCGATGTCCATGCTAGAGATGTGGTCATGGACATGATTGATATGG
Seq A exon
GTATGTGACTTCTTTTTCATATTGAAGATAAAATATTGATAGTTTCTAGAAACAAGAACTTGTACTATATGTCTTTTTCTGTCTCAGCAGAATTTATTTTATATGATCTTTTCTATAAATTAGAAAATGTGAATTATTTTAATGTTAATACTTTTGTAAACAATGATAAAATATCTAGTTTTCAAATTATTTCCATTTCAGGATTATGTGTCTTGTTTTACTTTATTCCTTCCAG
Seq C2 exon
GTGTCTCACATGATACAGATTTCCAGTGGCTTGCTCAGCTTCGTTATTATTGGGAATATGACAACGCTCGAGTTCGTATCATTAATTGCAATGTAAAATATGCTTATGAATATCTTGGTAACTCACCTCGACTTGTCATTACTCCTCTAACTGACAGATGTTACAGAACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(10.4=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTAAATGATATTGTGGAGCTGG
R:
TCTGTAACATCTGTCAGTTAGAGGA
Band lengths:
292-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]