DreINT0058215 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21353885-21354650:+
Coord C1 exon
chr1:21353885-21354076
Coord A exon
chr1:21354077-21354488
Coord C2 exon
chr1:21354489-21354650
Length
412 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTTACTCATTTTTATCATAGGAT
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTGGATTCTAGCGATAATTTCGAGTGGCAGAGGCAGTTGCGATATTATTGGGATGTGGATCTGGATGATTGTGTGGCCCGGATGGCACTTTCTCAATATATTTATGGATATGAATATTTGGGAGCATGTCCCCGTCTAGTAATCACTCCACTGACGGTACACATTCATTTAAATTTTTTTTTCCTTATGATG
Seq A exon
GTAAGGGATTTGTCAAATGCATTATATAAAATACATTTATATTTTAGTCTGTATAAAAAAATTTGCAATCTGAAGAATAATGGTTTGGCATAAAGTAAAAAAAAAAGTTAACATACTGAATGGTTGTCCATTCAAGCAATTCACTTCTTGTTGATTAATAGAATAAATATCTTGGTTTGTTTTTCAGTTTATTGATCATTTTCTGATAATCCAAATCCAGATTCTGATATTGGATCTTATATTTTTACGTCATGCATAAGAACTGTTTAACTACATATACTAAAACTTAAAAACTACTAAAAAACTAAGTTAAAACTACATATATTAAAGTGCATATCAGTGTATGGATAATCTATATTAATGTAGTGTGCATTTGCATTATCATTGTTATGTTTACTCATTTTTATCATAG
Seq C2 exon
GATCGCTGTTACCTCTGCCTAATGGGAGCGCTGCAGCTGGATCTCGGAGGAGCTCCTGCAGGTCCAGCAGGCACAGGCAAAACTGAGACCACAAAAGACCTTGCAAAGGCTCTGGCAATCCAATGTGTGGTGTTTAACTGCTCAGATGGACTTGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.9=45.3)
A:
NA
C2:
PF127742=AAA_6=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAATTTCGAGTGGCAGAGGCA
R:
CTTATAGTCAAGTCCATCTGAGCAGT
Band lengths:
342-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]