GgaINT0019472 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3064634-3065532:+
Coord C1 exon
chr12:3064634-3064747
Coord A exon
chr12:3064748-3065343
Coord C2 exon
chr12:3065344-3065532
Length
596 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGGTCTCATCTTTGTTGTAGATG
3' ss Score
8.63
Exon sequences
Seq C1 exon
ATCCTACTGGACCAAGGGGGACCTGTACATCAGAGCAGTCAATGCTGAGTTTGTGTATGGCTATGAGTACCTTGGGAACAGCGGCCGTCTGGTTATCACACCCCTCACTGACAG
Seq A exon
GTAAGGAAATTGGGTTTTGGGTAGTAAATGTACCTTCTTTTTTTCTGGAGGAACAAGCCTCAGGAGAGGTTAAACCAAGAATCTGAACGTGTCGGGCTTGGTTCTTAATGTATGTAAATAGAAGCCATTTGTACAGTAATGGCCTCTGTGAGATAGAACGCCCTGGCATTGGTCCCACTGTGTTCCTGGTGATCTGTGCTCACACTGATTTGCTTACTTTCTCCTGATTCTTAATGCGGCGCTCTGACTCGTCTCAAATGCCTTCCTGATAGCTAAGGAGCTCTTCTGCAAACTATAAAAGGATATCTCATACTCTGGAATATGCAGCAGTAATAATAGTTACACCCTTTTGTAACTGTCCTTTTTCTGGGGAGTGAATTTATAGCCAGTGGCAGAAGGATTTATCCATGCAGGCCCCCATGAATACTAATCGAGGCCACATAGCTAGCTCCTTCACAAAGTGCTGCATATCTAAGCAGCTCTGCAGAAAAATAAATGATGGATTCCTGCCTGTCTCCATCTGGAGAGCTCATTTCTTCTTTCCCGAAGCCGGTGGTAGAAATACTTCTCATTATCTGGTCTCATCTTTGTTGTAG
Seq C2 exon
ATGTTACCTGACGCTTACAGGAGCTCTGCACCTGAAATTCGGAGGAGCACCCGCGGGACCAGCAGGAACAGGCAAAACAGAAACAACAAAAGAGCTGGGAAAAGCACTAGCAATCCAAACTGTGGTGTTCAACTGCTCTGACCAGCTTGACTTCATGGCAATGGGAAAGTTTTTCAAGGGACTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=48.7)
A:
NA
C2:
PF127742=AAA_6=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTACTGGACCAAGGGGGA
R:
TGGCCAGTCCCTTGAAAAACT
Band lengths:
302-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]