DreINT0057977 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34426159-34426681:-
Coord C1 exon
chr11:34426571-34426681
Coord A exon
chr11:34426454-34426570
Coord C2 exon
chr11:34426159-34426453
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTTA
5' ss Score
0.67
3' ss Seq
ACACACTGTCTATTGCACAGGTG
3' ss Score
6.72
Exon sequences
Seq C1 exon
ATACTACTGGCGTCACGATCTTTACATCAGAGCTGTGAATGCTGAGTTTTTATACGGTTACGAGTACCTTGGCAACTCAGGTCGACTTGTTATCACTCCACTGACAGACAG
Seq A exon
GTGTTATCTAAAAAATAATATCTTCTTTTATATATGATTGTACATCAATGTATGTAAGGAAAGCCTAATAAAACTTTTCTCATAAATGTAAAATGTTACACACTGTCTATTGCACAG
Seq C2 exon
GTGTTATCTAACCCTGACTGGAGCACTTCACTTAAAATTCGGAGGTGCTCCGGCAGGCCCTGCAGGTACAGGAAAGACAGAAACCACTAAAGACCTGGGCAAAGCTTTGGCTATCCAGACTGTAGTGTTTAACTGCTCCGACCAGCTGGACTTCATAGCCATGGGCAAGTTCCTCAAAGGTCTCGCTAGTTCGGGGGCCTGGGCCTGCTTTGACGAATTCAATCGAATTGACGTGGAGGTTTTATCAGTCGTGGCTCAACAGATCACAACCATCCAAAAAGCCCAGCAGCAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(7.8=48.6)
A:
NA
C2:
PF127742=AAA_6=FE(42.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTTGGCAACTCAGGTCG
R:
CCCGAACTAGCGAGACCTTTG
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]